Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16358g00001 ATGGCATGGGTTAAGCATCAAATCCAGCAAAAAGATGGCTACTTGAGCTACTCACCACCTCTTTTGTCTTCATCTTCTTCACCCCCATACTCTCCTGGTGCTTCTTTCCACAAGGACTCATCATCATTGCCTTCTTCAACACCACCACCACATTCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGTCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTCAATCCAGCAGACACCAAGAAATTTCCACATCTGATGCTCTCCAGAGGCAGCTTCAACAGCTCTTCCACCTCCATGACTCTGGCTTGGATCAGGCTTTCATTGATGCTCTTCCTGTTTTCCAGTACAAGGAGATTGTGGGGTTGAAAGAGCCTTTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCTGAGAAGGATAAGCTCAGATTGTTGCCTGTATGCAGCCATGCTTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTCACCCCAGGGTATTCTATTGAGAACCCTATGTTTGATTTTGATGATATGAGGGAGGATGAAGGGTGCCCTTGTAATGGGGAGAGTGGATTCACTACCAGACAGAAAACAGTTGTGGTTGAGGAAGTTGTGGAGATGGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAGTTCAAGAAGCTGAATGTTGTGGAGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGGAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGAACTCAGGGTGACCTTGAATCATGAGAGTAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACATGCTGATGAGAAGAACCTTTCAGTGGAGGGGGATGTGGAAGGAAAGAAGATTAGTAGTATCTCAGGACGCCTTGGTTTGACGAAATTAGCTTTGTCCAAGGCACTGATAGTGGGATCCATGAAAAAGCTGGCGTCATAG 1080 0.4528 MAWVKHQIQQKDGYLSYSPPLLSSSSSPPYSPGASFHKDSSSLPSSTPPPHSSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASQSSRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGYSIENPMFDFDDMREDEGCPCNGESGFTTRQKTVVVEEVVEMEKGVFPVRLGKFKKLNVVEGGESEVGETSSSNLDARRCYSMGSYQYVVGNSELRVTLNHESKGQVTRLTKGMEHADEKNLSVEGDVEGKKISSISGRLGLTKLALSKALIVGSMKKLAS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16358g00001 359 SMART ring_2 149 190 IPR001841 -
Mupr16358g00001 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 196 IPR013083 -
Mupr16358g00001 359 SUPERFAMILY RING/U-box 128 197 - -
Mupr16358g00001 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 53 301 - -
Mupr16358g00001 359 FunFam RING-H2 finger protein ATL46 111 196 - -
Mupr16358g00001 359 MobiDBLite consensus disorder prediction 26 52 - -
Mupr16358g00001 359 CDD RING-H2_EL5-like 148 191 - -
Mupr16358g00001 359 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Mupr16358g00001 359 Pfam Ring finger domain 148 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16358g00001 Mupr-Chr16358 4547 6570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16358g00001 52 288 C3H Transcription Factor Family AT2G18650 46.768 1.07e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16358g00001 - - gmx:100806337 513.842