Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16311g00002 ATGATTTCAAGGGCCACATCTGGTTTCCAAAGTGTCCATCAAGAGCTTCAGATGTTCCCTGACCCTGAAGATTTGGTTTCACCTCCCTCTGTGGAAATAAACTCTTCAGGCTCAGCTTCACACTCTAGTTCCCTCCTCTTCAATCTCTCTATTCTCAAGGACAGGCTCAGTGAGGTGCAGACCCTGGTAAGTGTTATTCTCTCTCCAAATCAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCATAGTGACTGCCACATCAATGATTTTCACCTGCCAACAGATGGCTCTCACTATCCCTCCAGGTACTAATAATAATACTACTACTACATGCACCAACAAATTGCACCACCAGAACAAGTTGCCCCACTCAATCAATTTTGGCAACAATAGAATTGTGCTCGATAACATAGGCACGGATATTAGTAGTCAGGGTTTGTTTTCCAGTACTGAATCAGAGGCACTGGAGTGGTTCAGTGAAAGCTATGACAACAATAATATTAGTAAGATTAAGGAAGATGGTATCGATCCAAGCGTTGCAATTAGTAAAAACAATATTAGTAGAGGAGAAGTGTCTCCAAGGGATGAAGAAGGGTATATTAACTATAGAGAGCTTTCAGCAAAGAACAGTGATATAATTGAATTGGATGCTGAGGATTTGTTGGCCAAGTACACGCACTATTGCCAAGTTTGCGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGACGAGTACAAAACCAATGCTGCCTTGAGTAATCCAATAAAGAATAAGGGGAGAGAGTGTTTGATGAGTGTGAAGCCCAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTCCAGCCATTGAAGTCCATGATTTGTGCCAAGAATCACTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTTTCTGATCTGAGGACCCATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACCTCCTTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGGCACCAACCGGCTATCAACACTAATGCTCTCTTATACTCGGGAACATTAATTAGAACACCACACAATGCAAATGAAGATCGAACCTAG 1218 0.4433 MISRATSGFQSVHQELQMFPDPEDLVSPPSVEINSSGSASHSSSLLFNLSILKDRLSEVQTLVSVILSPNQSLPESTSMAISSMNSTIQEIIVTATSMIFTCQQMALTIPPGTNNNTTTTCTNKLHHQNKLPHSINFGNNRIVLDNIGTDISSQGLFSSTESEALEWFSESYDNNNISKIKEDGIDPSVAISKNNISRGEVSPRDEEGYINYRELSAKNSDIIELDAEDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKGRECLMSVKPKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAINTNALLYSGTLIRTPHNANEDRT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16311g00002 405 SMART c2h2final6 326 348 IPR013087 -
Mupr16311g00002 405 SMART c2h2final6 236 258 IPR013087 -
Mupr16311g00002 405 SMART c2h2final6 288 321 IPR013087 -
Mupr16311g00002 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Mupr16311g00002 405 FunFam Zinc finger protein 574 235 260 - -
Mupr16311g00002 405 Gene3D Classic Zinc Finger 221 291 - -
Mupr16311g00002 405 SUPERFAMILY beta-beta-alpha zinc fingers 234 261 IPR036236 -
Mupr16311g00002 405 Gene3D Classic Zinc Finger 324 374 - -
Mupr16311g00002 405 MobiDBLite consensus disorder prediction 20 41 - -
Mupr16311g00002 405 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Mupr16311g00002 405 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 36 385 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16311g00002 Mupr-Chr16311 15920 17137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16311g00002 17 381 C2H2 Transcription Factor Family AT5G22890 45.283 1.20e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr16311g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16311g00002 - - gmx:100802769 577.4