Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16284g00001 ATGTTCCCGGCGGCTCCGCCATCCGCCGCCGTGGCCACCACCGGCGTGGGACTGGGCTACGGCATCGCCATCGCCGTGAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGCATCAAGGCCAACGGTCGCCGCGACACCTACTACGACGATAGGCAACAAAACTACGTCCGCGAGACGCCTGGGCCCGTCGCGGTGGTATTGGGCCTCGAAAAGCCCACCATCGAGGCCTACCCAAAGATGGTAATCGGAGAGAGCAGGCGCTTGCCCAAGCCCAACGAAGGCCCGTGCGCCATCTGCTTGTGCGAATATCTTCCCAACGAGACCATACGCTGCGTTCCGGATTGCCACCACTGCTTCCACGCCCACTGCGTCGACGAGTGGCTCAGGATGAGCGCCACCTGTCCGCTGTGCCGGAACTCTCCCGCGCCGTCGCCGGCCGCCACGCCGCTGTCGGAACTGGTTCCGCTGGCTTTCCACGCCAGGCTTTGGGATTCCTGTATCCAATTTGAGTGCCATACGTTAGAAATTTCATTAGAGATTTCATAA 567 0.6173 MFPAAPPSAAVATTGVGLGYGIAIAVSILVLISTIMLASYACVRIKANGRRDTYYDDRQQNYVRETPGPVAVVLGLEKPTIEAYPKMVIGESRRLPKPNEGPCAICLCEYLPNETIRCVPDCHHCFHAHCVDEWLRMSATCPLCRNSPAPSPAATPLSELVPLAFHARLWDSCIQFECHTLEISLEIS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16284g00001 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Mupr16284g00001 188 SUPERFAMILY RING/U-box 97 151 - -
Mupr16284g00001 188 CDD RING-H2_EL5-like 103 145 - -
Mupr16284g00001 188 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Mupr16284g00001 188 Pfam Ring finger domain 103 145 IPR001841 -
Mupr16284g00001 188 PANTHER RING-H2 FINGER PROTEIN ATL67 9 166 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16284g00001 Mupr-Chr16284 11075 11739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16284g00001 1 168 C3H Transcription Factor Family AT5G07040 63.314 1.45e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16284g00001 - - ccaj:109806705 268.085