Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16249g00002 ATGGCGATGGAGGGAGCGAGAAACGTGGATGGAGAACGGAACAATTCGAACGAGTCGACTCGGCCGGAGGAGAAACCCGACCCGGTGGAGGAGATTCAGCGAGTCATCGAATCGATGGTTCAATTCGGCGAGTACCGAAGGACGCAGAGGAAGGAATGCCACAACCTTGTGCGTCGTTTTAAGCTCATGTTGCCCCTCTTGGAAGAGCTTCGCGACCTCCCACAACCCTTTCCCCAAAGCGGCGTTGTTTGGTTAACCAAACTCAAGGACGCGCTTTTCTTCGCCAAGGACTTGTTGAAATTGTGCAGCCAAGGAAGCAAGATTCACCTCTCTATGGAGAACGAGTCAGTTATGGTCACGTTTCAGAAAGTGTATGACAAATTAAGCCAAGCGTTTGATCGGGTGCCTTGTGATGAATTGGGTATCTCGGATGAAGTCAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGCGAGCCAGGAGAAGAACTGATACACAGGATATAGAACTTGCAATGGATATGATGGTGGTGTTCTCTGACGATGATGATAGAAATGCTGATAGTGCTATCATCGAGAGGCTGGCAAAAAAGCTGGAGCTTCATAGTGTTGAGGATCTTAATGTAGAAACAGTGGCTATTAGGAACCTTGCTGCAGAAAGAAAAGGGCAACAGGCTGAGAGTACCAAGAAAATAATTGGCCTTCTTAACAAATTCAAACAAATTGCAGGCATGGAAGAAACCAACATCCTTTATGATCCTGCCATGCCAAAGATGCTTGAGAGGTGCACCTCTTTGATCATCCCTCATGAGTTTCTCTGCCCAATAACACTAGAGATCATGACAGATCCTGTTATTATCACAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCGAACCATAACACCTGCCCAAAGACTAGGCAACCCTTGGCTCACCTTTCAGTGGCACCAAACTGTGCCTTGAAAAGCTTGATTGAAGAATGGTGCGAGAACAACAACTTCAAACTTCCCAAAAAATACAATTCCTCAAGCCAAGAAAGTTCTTCCACAGACAGCAAAGAGGAAATTCCAGCATTGGTAGAGAGCCTATCATGTTTCCATTTAGAAGAGCAGAGAAGGGCAGTGGAGAAGATACGCATGGTATCAAAGGAAAGTCCTGAGAACAGGATTTTGGTTGCTGAGCTTGGAGGAATACCACCACTGGTGCAACTCCTGTCATATCCAGACCCCAGAATACAAGAGCATGCTGTGACAGCACTCTTGAATCTTTCAATTGATGAGGGCAACAAGAAGCTTATCTCCATAGAAGGTGCAATTCCAGCCATCATAGAAGTGTTGGAGAATGGGACCTGTGTGGCCAAGGAAAACTCAGCAGCAGCATTGTTCAGCCTGTCAATGGTTGATGAGCTAAAGGAGCTTGTGGGGCAGTTAAATGGGATCCCCCCTTTGGTGGGTTTGTTGAGAAATGGAACAGTTAGAGGGAAGAAAGATGCTGCCACAGCTCTTTTTAACCTAGCTCTCCACCATGCAAATAAAGGTAGGGCCATTAGGGCTGGCATTGTAACACCCTTGCTTCGACTGCTAGAGGACACAAACTTGGGAATGATTGATGAGGCACTCTCCATTCTCTTGCTCCTTGCGTTTAACTCAGAAGGGAGACAGGAGATTGGAAACCTCACGTTCATTGAAACCCTAGTTGCGTTCATGCGAGATGGGACTCCTAAGAACAAGGAATGTGCAGCGTCTGTTCTTCTTGAGTTGTGCATAAATAACTCCTCGTTTACATTGGCAGCGCTTCAGTTTGGAGTGTACGAGCATTTAATAGAGATCAAACAAAATGGAACAAGTAGAGCACAGAGGAAAGCGGTTGGAATCTTAGAGCTCATAAGCAGGAGCGAGCAAATTTAA 1926 0.4605 MAMEGARNVDGERNNSNESTRPEEKPDPVEEIQRVIESMVQFGEYRRTQRKECHNLVRRFKLMLPLLEELRDLPQPFPQSGVVWLTKLKDALFFAKDLLKLCSQGSKIHLSMENESVMVTFQKVYDKLSQAFDRVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDDDRNADSAIIERLAKKLELHSVEDLNVETVAIRNLAAERKGQQAESTKKIIGLLNKFKQIAGMEETNILYDPAMPKMLERCTSLIIPHEFLCPITLEIMTDPVIITSGQTYERESIEKWFQSNHNTCPKTRQPLAHLSVAPNCALKSLIEEWCENNNFKLPKKYNSSSQESSSTDSKEEIPALVESLSCFHLEEQRRAVEKIRMVSKESPENRILVAELGGIPPLVQLLSYPDPRIQEHAVTALLNLSIDEGNKKLISIEGAIPAIIEVLENGTCVAKENSAAALFSLSMVDELKELVGQLNGIPPLVGLLRNGTVRGKKDAATALFNLALHHANKGRAIRAGIVTPLLRLLEDTNLGMIDEALSILLLLAFNSEGRQEIGNLTFIETLVAFMRDGTPKNKECAASVLLELCINNSSFTLAALQFGVYEHLIEIKQNGTSRAQRKAVGILELISRSEQI 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16249g00002 641 Gene3D - 26 137 IPR036537 GO:0007166
Mupr16249g00002 641 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Mupr16249g00002 641 MobiDBLite consensus disorder prediction 1 29 - -
Mupr16249g00002 641 PANTHER U BOX DOMAIN-CONTAINING 50 635 - -
Mupr16249g00002 641 Gene3D - 343 641 IPR011989 -
Mupr16249g00002 641 SMART arm_5 473 513 IPR000225 GO:0005515
Mupr16249g00002 641 SMART arm_5 391 431 IPR000225 GO:0005515
Mupr16249g00002 641 SMART arm_5 555 595 IPR000225 GO:0005515
Mupr16249g00002 641 SMART arm_5 432 472 IPR000225 GO:0005515
Mupr16249g00002 641 SMART arm_5 514 554 IPR000225 GO:0005515
Mupr16249g00002 641 SUPERFAMILY ARM repeat 361 638 IPR016024 -
Mupr16249g00002 641 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Mupr16249g00002 641 FunFam RING-type E3 ubiquitin transferase 25 138 - -
Mupr16249g00002 641 Pfam U-box domain 268 338 IPR003613 GO:0004842|GO:0016567
Mupr16249g00002 641 Coils Coil 143 163 - -
Mupr16249g00002 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Mupr16249g00002 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 484 526 IPR000225 GO:0005515
Mupr16249g00002 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 342 IPR013083 -
Mupr16249g00002 641 FunFam RING-type E3 ubiquitin transferase 266 341 - -
Mupr16249g00002 641 Pfam Armadillo/beta-catenin-like repeat 391 430 IPR000225 GO:0005515
Mupr16249g00002 641 Pfam Armadillo/beta-catenin-like repeat 474 512 IPR000225 GO:0005515
Mupr16249g00002 641 SUPERFAMILY RING/U-box 268 343 - -
Mupr16249g00002 641 FunFam RING-type E3 ubiquitin transferase 345 641 - -
Mupr16249g00002 641 CDD RING-Ubox_PUB 269 321 IPR045210 -
Mupr16249g00002 641 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16249g00002 Mupr-Chr16249 12309 16100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16249g00002 29 641 U-box Gene Family AT5G42340 61.990 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16249g00002 - - gmx:100777362 1045.03