Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16227g00002 TCCACTCCACTCCACTCCACTCTCACCCCAACAAACAACATCAACAACAAGATCTCTTCTCATCTCATATCATCTCATCAAACTTCATCAAAAGATAACTCCTCTTTTCTCAGCCAACAAATTCTTTACCTGCCACAAGACCCCACACCAACAATATATAACACCCACATTACATACACACCCCCATATACACAACAACAACAACAACTTCCATTAGTTATATATATTTTGATTCTCTTTGATTTGAGAAATCAAGCACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGCCACAACTTCCTCCTCCGGCCGCGCTGTCCCGGTAGACGATCTCTCCCTCGGCTTCAATGCGGCTCCTTCCGCTGCCGCCGCTGCCGGACCCGCCGCCGGAATGTGGTCCACCGCAGCTAGGTCAATCAATTACCCCGAAATGGGGATGTTCGTCGTCGCGCCAGCTTCCTCCTTCCACCACCACCACCAGCCGCCACCGCATGACCCCGTCATGGCGGATTCACTCAACCCCGCCACTGCACTCGGCGTCGGCGTCATCCCGCTCCTCGCGGCCACGCCGTGTCTGGAATCCGACAACGTCCTCGGAAATAGGACACGTGGCGGGGGAATTCAGTTCTGGCAGGACCAGCCACCGCACCAAGGGCACTACTTGAAGAAGCAGCATCAGCAGGGTCTTTTTAACCTCGACCACGACAATGCTAGCTCCGGGAATTTGGTTCAGAGCAGTGGCGGCGTAACTGCTTCGGGCACCAACAGCGGCGGAACCACGTGCCAAGACTGTGGAAACCAGGCCAAAAAAGATTGTTCCAATAGAAGGTGTAGGACGTGTTGCAAAAGTCGAGGTTACGATTGCCCTACTCATGTTAAGAGCACATGGGTCCCCGCCGCACGCCGGAGAGAGCGCCAGCTTATGGCCACCACCGCCGCCGTTGCTGGCTCTAGCGGCTCCACTTCCGGGACGAAAAAACCTAGGCTCATTGCTTCACAAACCACAACAACTTCTCATACTTCCACTTCCAACACCACTCCTCCTAGAAGCTTTGACACTAGCTCTAGTCATCAAGATGCGGGTTTCAAAGAGTCTTTACCTGGGCAAGTACGTGCACCAGCAGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGACAAGATGAGTATGCGTATCAGGCTGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTTTATGATCAAGGAGTGGAGAATAGGGATGTGTATCCTAATCTATCTGAGTTGCATTTGGGTGGAGGGAGAAATGGGGTTTCATCTTCGTCTCCAATGATGGATCCTTCTGATGTTTATGCAGCTTCGGGTGGAGGTTTACTAGGGGGTTCTTCCGCATAT 1416 0.5219 STPLHSTLTPTNNINNKISSHLISSHQTSSKDNSSFLSQQILYLPQDPTPTIYNTHITYTPPYTQQQQQLPLVIYILILFDLRNQALSVVATTRRLPSDSGAFADWAATTSSSGRAVPVDDLSLGFNAAPSAAAAAGPAAGMWSTAARSINYPEMGMFVVAPASSFHHHHQPPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNVLGNRTRGGGIQFWQDQPPHQGHYLKKQHQQGLFNLDHDNASSGNLVQSSGGVTASGTNSGGTTCQDCGNQAKKDCSNRRCRTCCKSRGYDCPTHVKSTWVPAARRRERQLMATTAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGRNGVSSSSPMMDPSDVYAASGGGLLGGSSAY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16227g00002 472 MobiDBLite consensus disorder prediction 322 373 - -
Mupr16227g00002 472 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 190 460 IPR007818 GO:0003700|GO:0006355
Mupr16227g00002 472 MobiDBLite consensus disorder prediction 321 377 - -
Mupr16227g00002 472 NCBIfam LRP1 C-terminal domain 377 424 IPR006511 -
Mupr16227g00002 472 Pfam Domain of unknown function (DUF702) 269 425 - -
Mupr16227g00002 472 NCBIfam putative zinc finger domain, LRP1 type 271 313 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16227g00002 Mupr-Chr16227 17277 19010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16227g00002 86 457 C2H2 Transcription Factor Family AT5G12330 52.542 2.16e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mupr16227g00002 DUF702 7.4e-61 No_clan