Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16187g00008 ATGGATGTTATTCTTGAGGTTCAGGGAGGGAACTCTTTGTCTATTGCAGTTGATCCCCTCGACACAGTCCGCGATGTGAAAGAGAAGGTGCAAAACTTAAACCACATTCCCATTTCCCACCAAACCTTCATCTTCAATGGCCAACTTCTCCAAGACGATCTCCACCTTTGGGAATCACAAATCGATCGCGGCTCCCGCATTCACCTCCTAGTTGCTAATGATGATGCAGAAAACCCTGCGAGTCTTGACATGCCGCCGTCAAATATAACGGAGTTGGACTTGTTTCTGGCGAGTATTGACATGCCGGCGTCAAATATAAAGGGGTTGGAAAAGTGGCTGCCGAGTCTTGACATGCTGCCGTCAAATAGAGAGGAGTTGGAAGAAATGCTGCCGAGTCTTGAGATGCCACCACCAAGGATGACGCTGAGAGAGAAGCTTTTTGGGCAGCAAGGCGTGCCTGCAGAGAGAACTAGGGTCACGTTCAGGGTGAAAATGATTGAAACCAAACGGGTCAGGTCTTTCCCCATGGAAATGTATCTCTACGACACGGTTCTGTGTCTAAAGGAGAAGATTTATAATTTAAAGAAACCTGAAAATATAAAAGCGAAAGACATGGAGGTGCTGTTAAAATCGGGTTACGAATTGAAAGACCAGTGGTCGCTGCAAGATTGTGGAATGTTAAATATTTCACATGTTTACGTGCGTAAAAGATTAGCACAACCACGGGAGCCTGGTACTGATGCCCATTTCGGGACAAAGATGTTGAATCTGATGCTTGTTCCCAAGGGAGGGACTCAGAAGATACCCATCCAAGTCAATATTTTGAATAGTGTGGGAGATATGAGGTTTGAGTTGGAGAAATTTCACAGGCATGTTCTTCCCCAAGATCTTTCTTACTTTTTCACTAACAAGAAAGGCCATGTGATGAGTGAAACACTTGCATTTAACTGGTTCCGATTGGAAGACGGTGACACAATTGAAATCACTCCCGCATCCATTTAA 1002 0.4491 MDVILEVQGGNSLSIAVDPLDTVRDVKEKVQNLNHIPISHQTFIFNGQLLQDDLHLWESQIDRGSRIHLLVANDDAENPASLDMPPSNITELDLFLASIDMPASNIKGLEKWLPSLDMLPSNREELEEMLPSLEMPPPRMTLREKLFGQQGVPAERTRVTFRVKMIETKRVRSFPMEMYLYDTVLCLKEKIYNLKKPENIKAKDMEVLLKSGYELKDQWSLQDCGMLNISHVYVRKRLAQPREPGTDAHFGTKMLNLMLVPKGGTQKIPIQVNILNSVGDMRFELEKFHRHVLPQDLSYFFTNKKGHVMSETLAFNWFRLEDGDTIEITPASI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16187g00008 333 FunFam Ubiquitin-like superfamily protein 1 72 - -
Mupr16187g00008 333 ProSiteProfiles Ubiquitin domain profile. 159 241 IPR000626 GO:0005515
Mupr16187g00008 333 Gene3D - 163 235 - -
Mupr16187g00008 333 Pfam Ubiquitin family 168 234 IPR000626 GO:0005515
Mupr16187g00008 333 Pfam Ubiquitin family 5 72 IPR000626 GO:0005515
Mupr16187g00008 333 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Mupr16187g00008 333 SMART ubq_7 159 237 IPR000626 GO:0005515
Mupr16187g00008 333 SMART ubq_7 1 72 IPR000626 GO:0005515
Mupr16187g00008 333 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 81 - -
Mupr16187g00008 333 Gene3D - 1 82 - -
Mupr16187g00008 333 CDD Ubl_ubiquitin_like 166 235 - -
Mupr16187g00008 333 CDD Ubl_ubiquitin_like 3 70 - -
Mupr16187g00008 333 SUPERFAMILY Ubiquitin-like 172 245 IPR029071 -
Mupr16187g00008 333 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16187g00008 Mupr-Chr16187 60180 61181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16187g00008 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.986 7.35e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16187g00008 - - vun:114191420 214.542