Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16169g00001 ATGTTTTTAGGGAACGTTAGTGAGATGGCAAAGGTTTGCAGCAACAACACTTACGAAGAGGCTAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGTGTTTTCTGTTTTGAATTTTGATGACTGTTCAACTTACTTGGTTTCACCTTTTGCTCTCAAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAAATCACAAGTTCTGCCAAGAAGACGGTGCATCATCTTCCTAAACTGAAACCAAAGAAGACTAATGGTGAAGTGGAACTTAGGCGATCTTCTCGTGTGCGAAACCCAGTTCCTTCATACCGTGAAGATGTGAGCTTAGACCTTCCATCTTTGCGGAAGAGGTCAAGGTCAAATTCTTCAACATGGGGAAGGACTCTCAGATATGTTGTGAGGCCACTAGATGAAATCAAAGAAGCAACAGAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCAAATCCATCATTTATCAAGTCAATGGTTCGGTCTCATGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGCTCAGAATATGAGGCTGTTTACATTGGCAACAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTAGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAGCTTCAAGATTTAAGGGACAACCAGTAGAAAAGGAGTATGAAACTTGA 780 0.4013 MFLGNVSEMAKVCSNNTYEEARKQRLEENKKRFEVFSVLNFDDCSTYLVSPFALKDLGISRISKNLTEITSSAKKTVHHLPKLKPKKTNGEVELRRSSRVRNPVPSYREDVSLDLPSLRKRSRSNSSTWGRTLRYVVRPLDEIKEATEEERLCALEAAEALQINLNSSNPSFIKSMVRSHGLPSKFCEEHLPKTVYDMVLEDENGSEYEAVYIGNRSGLSGGWRAFALDHKLDDGDALVFELIEASRFKGQPVEKEYET 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16169g00001 259 SMART B3_2 172 256 IPR003340 GO:0003677
Mupr16169g00001 259 CDD B3_DNA 170 249 IPR003340 GO:0003677
Mupr16169g00001 259 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 68 249 IPR044837 -
Mupr16169g00001 259 Pfam B3 DNA binding domain 173 248 IPR003340 GO:0003677
Mupr16169g00001 259 SUPERFAMILY DNA-binding pseudobarrel domain 165 248 IPR015300 -
Mupr16169g00001 259 ProSiteProfiles B3 DNA-binding domain profile. 182 256 IPR003340 GO:0003677
Mupr16169g00001 259 Gene3D - 146 251 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16169g00001 Mupr-Chr16169 477 4785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16169g00001 18 249 B3 DNA Binding Superfamily AT5G58280 50.996 4.55e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr16169g00001 B3 3.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16169g00001 - - gmx:100786265 347.051