Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1614g00004 ATGGAGGACGCGGACGCAGCGGACACACTTCGCATTCTGGTAGCCACCGACTGCCACCTCGGTTACATGGAGAAGGATGAAGTGCGCCGCCACGACTCGTTCCACGCCTTCGAGGAGATTTGCTCCGTCGCGGAGCGCCACCGCGTGGATTTCGTGCTCCTCGGCGGCGACCTCTTCCACGAGAACAAGCCTTCGAGGTCAACCCTAGTCAAGGCCATCGAGATTCTCCGTCGCTACTGCCTCAACGACCGCCCCGTCCCCTTCCAAGTCGTCAGCGACCAGACGCTTAATTTTCAGAATGCGTTTGGTCACGTGAACTATGAGGATCCTCACTTCAATGTTGGTTTGCCGGTGTTTACCATTCATGGAAATCATGACGATCCTGCTGGCGTGGACAACCTTTCTGTAGTTGATATTCTCTCGGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTTGGTCAGATCGCTCTCCACCCTATTCTTATCAAGAAGGGTTCAACAGCTGTAGCTCTGTATGGTCTGGGAAACATTAGAGATGAAAGGCTTAATAGGATGTTTCAAACACCACATGCTGTGCAATGGATGCGACCTGAATCTCAGGAAGGGTGTCAAGTGTCTGATTGGTTCAACATTCTGGTACTTCATCAGAACAGGGTGAAAACGAATCCAAAAAATGCAATAAATGAGCACTTCCTGCCACGCTTCCTAGACTTCATTGTGTGGGGCCACGAGCATGAATGTTTGGTTGACCCGCAGGAAGTTCCAGGTATGGGATTTCACATTTCACAACCAGGGTCATCAGTTGCGACATCACTTATTGATGGAGAATCAAAGCCGAAGCATGTACTTCTTCTAGAAATTAAGGGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAGGTAATACTAAAAGATGAGCCGGATATTGATCCCAACGATCAACACTCTATTCTTGAACACCTGGACAAAGTGGTTGGGGAACTGTTAGAAAAGTCTAGTAAGAAGGTTGTCAATAGAAAAGAACTCAAGCTTCCACTAATCCGTGTCAAGGTAGATTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATATGTTGGAAAGGTTGCAAATCCCCAAGACATTCTCATTTTCTCAAAGGCTACAAAAAGGGCCAAGGTTGAAGGAAAAATTGATGATTCAGAACGACTTCGCCCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTGAAAATGGAGATACTGCCAGTCAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAGGATGATAAAATGGCATTTTACTCTTGTGTACAATACAATATTGAGGAAACACGAAATAAAATTGCTAAGGATTCAGATAACCTGAAGTTTGAGGAGGAAGATTTAATTGTTAAAGTTGGAGAATGCTTGGAGGAACGTGTCAAGGAACGATCCATAGGCTCCAAGGAACCCACACAGCTCACTGCTGGTGCTCAATCACGGCAGGATTTCCAAGCTAGAAGTGCTGCTGGAACTGGAAGTGCAGTTTCCTTTAGTGATGATGAAGATGCCATGCCAGTATCTAGCTCAAAGCCTAGTACTAGAGGTCGGAAAGGGTCATCTGGTGCATCTCAAACTTCAACCAGAGGAAGGGGCAGAGGAAGAGGCAGGGGTTCCAGCACCATGAAGCAGACAACTCTTGATGGAGCTTTAGGGTTTCGCTTTTCTCAGAGGTCTGCATCAGTTGCTGCAGCAACTGCCATCCAAAGTGCCGCTGATGGGGATAATTTGGCCTCTGCTTCAAGTGATGATGCCAATAAAAATGCTGTTGAAGAGATTGATGATAGTTCGGAAAATGAATCCAAGCTACCAGGACGGAAGAGGGCTGCTTCAAGGGGAAGAGGTAGAGGATCTACACAGTCTTCTAAACGTGGAAGGAAATCAGATAACTCTTCTATCCATAGAATGCTCATGAATAATGACGATGACGACGACGATGACGACGATATCAGAAAGAGATTAAATAAACCGAGCAAGTTGGAAGTCATGGCAGCAACATTGATGGCAGCAACAGCAAGCTCTGGCACTGTTCTTAAGCCAACTCCTTTCCTTGGCCAAGGCAAGGGTGCCAACGCCAACCCTCTTAAGGATGTTGTCCCCATGGGAACCGGGAAATACACCATGAGCAATGAATTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTGAAAGGAGAATTCCCAGGGGATTATGGATGGGACACTGCTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAAAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCCATGCTTGGAGCACTAGGATGCATCACCCCGGAGGCGCTACAGAAGTGGGTGAGAGTGGAATTCAAGGAGCCAGTGTGGTTCAAAGCTGGATCCCAAATATTCTCAGAAGGTGGGCTTGACTATTTGGGGAACCCAAACCTTGTCCATGCCCAAAGCATCCTGGCAGTGCTAGGGTTCCAAGTTGTTCTGATGGGCCTTGTTGAAGGGTTCCGCATCAACGGGCTTGATGGGGTGGGAGAGGGCAACAACCTCTACCCTGGGGGTCAGTACTTTGACCCTTTGGGCCTTGCTGATGACCCTGTCACCTTTGCTGAGCTCAAAGTCAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCTATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGAAAAGGTCCATTGGAGAACCTTTTGGACCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACTAAGTTTGTGCCTGGATCTTAA 2919 0.469 MEDADAADTLRILVATDCHLGYMEKDEVRRHDSFHAFEEICSVAERHRVDFVLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNAFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQIALHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLMSVRPFEYTEVILKDEPDIDPNDQHSILEHLDKVVGELLEKSSKKVVNRKELKLPLIRVKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKATKRAKVEGKIDDSERLRPEELNQQNIEALVAESNLKMEILPVNDLDIALQNFVNKDDKMAFYSCVQYNIEETRNKIAKDSDNLKFEEEDLIVKVGECLEERVKERSIGSKEPTQLTAGAQSRQDFQARSAAGTGSAVSFSDDEDAMPVSSSKPSTRGRKGSSGASQTSTRGRGRGRGRGSSTMKQTTLDGALGFRFSQRSASVAAATAIQSAADGDNLASASSDDANKNAVEEIDDSSENESKLPGRKRAASRGRGRGSTQSSKRGRKSDNSSIHRMLMNNDDDDDDDDDIRKRLNKPSKLEVMAATLMAATASSGTVLKPTPFLGQGKGANANPLKDVVPMGTGKYTMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEALQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1614g00004 972 Gene3D - 5 310 IPR029052 -
Mupr1614g00004 972 MobiDBLite consensus disorder prediction 509 536 - -
Mupr1614g00004 972 Pfam Chlorophyll A-B binding protein 771 938 IPR022796 -
Mupr1614g00004 972 Pfam Calcineurin-like phosphoesterase 10 254 IPR004843 GO:0016787
Mupr1614g00004 972 FunFam Double-strand break repair protein 311 409 - -
Mupr1614g00004 972 Gene3D Chlorophyll a/b binding protein domain 761 965 - -
Mupr1614g00004 972 SUPERFAMILY Metallo-dependent phosphatases 10 339 IPR029052 -
Mupr1614g00004 972 SMART Mre11_DNA_bind_2 299 452 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Mupr1614g00004 972 Coils Coil 469 489 - -
Mupr1614g00004 972 MobiDBLite consensus disorder prediction 631 648 - -
Mupr1614g00004 972 Pfam Mre11 DNA-binding presumed domain 300 452 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Mupr1614g00004 972 Gene3D Mre11, capping domain 311 409 IPR038487 -
Mupr1614g00004 972 MobiDBLite consensus disorder prediction 544 587 - -
Mupr1614g00004 972 MobiDBLite consensus disorder prediction 503 587 - -
Mupr1614g00004 972 FunFam Chlorophyll a-b binding protein, chloroplastic 761 965 - -
Mupr1614g00004 972 FunFam Double-strand break repair protein 5 310 - -
Mupr1614g00004 972 NCBIfam DNA repair protein (mre11) 7 401 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Mupr1614g00004 972 SUPERFAMILY Chlorophyll a-b binding protein 753 969 - -
Mupr1614g00004 972 CDD MPP_Mre11_N 11 279 IPR041796 -
Mupr1614g00004 972 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 1 690 - -
Mupr1614g00004 972 MobiDBLite consensus disorder prediction 631 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1614g00004 Mupr-Chr1614 46872 58629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1614g00004 704 971 Chloroplast and Mitochondria Gene Families AT2G05070 66.065 4.50e-115 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1614g00004 K10865 - gmx:100801335 1223.76