Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16135g00001 ATGGAACCGCCAGTTGCGAGATCGAGAGGTCGACCAAGGAAACGGAGAAGAAATGAAGAGGAAAATGAGAACGAGGCGAAAAGGCAGGCTATGGGGACGCGAGCCGTAGCGTTAGTTGGGAGATACGTGCTGAAGGATTTTCCCGGAAATGGAGTTTTTCTCGGGAAAGTTGTGTACTACGAGTGCGGATTGTATAGAGTAAGTTACGAGGATGGTGATTGCGAGGATTTGGATAGTGGTGAGGTGCGCGCGATACTTCTCAGAGATGGTGATTTCGATGATGACTTGGCGCGGAGGAGGGGCGAATTGGAGGAATTGGTGTCGCGGAATGGTGGAAAGGTGGGGGTTGGTTCGGTGAAGCGCCCTGCTGAAAGGAGTAAGGAGGAATCCGAGGTTGGAGTGAGTGAATTGAGGGCCGAGTTATTGGTTGAAAACGATGAGGGACAAGGGAATGATGACGATGATGATGTGGATGGTGAATCTTCTAGTGACTCAGGTTTGGGAGGGACTGATGCAGAGGTGTTGCTACCGCCACCGCCGGAGTTGCCGCCGTCGTCTGGAACCATTGGCGTTCCTGAGCAGTGTGTCTCACACCTCTTTGCTGTGTATGGATTCTTGAGATCTTTCAGCATTCGGTTGTTTCTACTGCCGTTTACTTTGGATGAGTTTGTTGGTGCTCTTAATTGCCGCGTTGCAAACACGCTGATTGATGCCGTTCATGTTTCCCTAATGAGAGTGTTGCGCCGTCATCTTGAAAACCTCTCATCGGAGGGCTCGGAGCTTGCTTCAAAATGCCTTAGGTGCAATGATTGGAGCTTGGTTGATCTATTGACCTGGCCTGGCTTTTTGGTCCAATATTTAGTAGTCAATGGATACACAAATGGAAATGAGTGGAGAGGATTTTATGAAGAGGTCTCCACTGGTGAGTATTATTTATTTCCTGTGACTAGGAAATTAATGATATTACAGATTCTATGCGATGATGTTTTAGAATCAGAGGAGATGAAAGCTGAAATGAATACACGGAAGGAATCAGAGGTTGGCATAGATTATGATGATGGAGAAGATATCCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATATGTCAATACTTCAGCTTGCGAGGATAAAGAAGCTACAAATTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAACTCTATTTCATATTCCAGAGATACAGAAAGTACTGAAGATGGTGTTGATAGAAACGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCCTGCTTTGTTGTGACGGGTGTCCCTCCGCTTATCATTCAAGGTGTATTGGTGTGATGAAAAATCATATACCAGAAGGCCCATGGTACTGTCCAGAGTGCAAAATTAATATGGCGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATGTTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACTTGTGAACACTTACTTGTGTATGTTCAACATCTTTGTAGTTACTTCCATTTGCTGAATATTGGCAGTGATGAATTTCGTCTTAGATATTACAATCAGAATGACATTCCCAAGGTTCTCCAAGTGCTTTATGAATCCATGCAACATAGACCAATATACCATGATATTTGCATGGCAGTGCTCCAATATTGGTGTGTTCCAGAAAGTTTCTTGTTTCATTCTGTTTCCACTGGAGCAAATGTAAACTCAGCAAATATAAAGGAAGAGACAAAGCCCTCTACTTCATTACTTCCTCCTTTGGGTGAAGGCAGCCATAAACCTGTTAGTTTGGTGAAGGAAGAGTATCCTTTAACTACTGTGAGTACAATTTACAGTGATAATATGGTGCCATTTCTTGATGCTTCGTCAGTTACCACTCTAAGTCCTGCTCCTCAGTGCAATGGCAATTATAGCAGTAATGAGTACCCTACTGTGACTATGAAGCTCCCTGAGGACACTGGGATGGAGTTCATCATCTCAGCTGATTCTGCTTCTTTTTCTGTTAGTCACCAGTCCGACATGAACTATCAAACTTTTGTTGATAGGCCAACTGCAGTAGATCCTGCCAAGTGCTCTTTGGTAAATGGTCAATTTAGTAATTATGGCCATGCAAATGATACAGGGTTGCCTATAAATCTTTCTTTGCAAACCAAAGAAAGCATGCAAGCAGGTTTTGAAAAGTGTGAACGCAATGTAACCAATGATTTTGCATACATGGGTTTCTCCTACAAGCCTTTGTCATACATTAATTACTATATACATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAGTCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAAACTGTATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTATTTCAAGCAAGAGAGGATGCATGTTGAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTTTAAAAATGCTTGCTGGTTTTTCTCCTATAAGAAATGGAGAGGGAATACTCCCTAGTATTGCAACTCACATTATATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGACAATGGCGTAATCGAGTGGAGCAGGCCACAACATTGACTGCTATCAAGCCACTTTTACTTAAACTTGAGGAGAACATTCGAACCATTGCTTTTTGTGGGGACTGGGTAAAGCTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCTACTCTTGGAACAGCACAAAAACGTGCACCAAGTGGAAGGCGTTACAAGAAGCGGTCAACTATTGATGAAGCTACACCTGTTGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGTAAATTCACCAAATTTATATTCCAGAAAGCAATCTTGCCAAAATCCATGGTCAGAAAAGCAGCTCGACAA 3054 0.4384 MEPPVARSRGRPRKRRRNEEENENEAKRQAMGTRAVALVGRYVLKDFPGNGVFLGKVVYYECGLYRVSYEDGDCEDLDSGEVRAILLRDGDFDDDLARRRGELEELVSRNGGKVGVGSVKRPAERSKEESEVGVSELRAELLVENDEGQGNDDDDDVDGESSSDSGLGGTDAEVLLPPPPELPPSSGTIGVPEQCVSHLFAVYGFLRSFSIRLFLLPFTLDEFVGALNCRVANTLIDAVHVSLMRVLRRHLENLSSEGSELASKCLRCNDWSLVDLLTWPGFLVQYLVVNGYTNGNEWRGFYEEVSTGEYYLFPVTRKLMILQILCDDVLESEEMKAEMNTRKESEVGIDYDDGEDILPSEVGLRRVQPRYVNTSACEDKEATNFVSASNAVNQPGNSISYSRDTESTEDGVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKNHIPEGPWYCPECKINMAGPTIAKGTSLRGAEMFGKDLYGQLFMGTCEHLLVYVQHLCSYFHLLNIGSDEFRLRYYNQNDIPKVLQVLYESMQHRPIYHDICMAVLQYWCVPESFLFHSVSTGANVNSANIKEETKPSTSLLPPLGEGSHKPVSLVKEEYPLTTVSTIYSDNMVPFLDASSVTTLSPAPQCNGNYSSNEYPTVTMKLPEDTGMEFIISADSASFSVSHQSDMNYQTFVDRPTAVDPAKCSLVNGQFSNYGHANDTGLPINLSLQTKESMQAGFEKCERNVTNDFAYMGFSYKPLSYINYYIHGDFAASAAAKFALLSSEESRSEGHVSDNQRKTVSGNTYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPISSKRGCMLNHAALSATKSALKMLAGFSPIRNGEGILPSIATHIIYMEECLRGLVVGPFLSASYRRQWRNRVEQATTLTAIKPLLLKLEENIRTIAFCGDWVKLMDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSTIDEATPVGCPENFVWWRGGKFTKFIFQKAILPKSMVRKAARQ 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16135g00001 1018 MobiDBLite consensus disorder prediction 120 145 - -
Mupr16135g00001 1018 SUPERFAMILY FYVE/PHD zinc finger 389 462 IPR011011 -
Mupr16135g00001 1018 CDD PHD2_CHD_II 419 460 - -
Mupr16135g00001 1018 Pfam PHD-finger 419 461 IPR019787 -
Mupr16135g00001 1018 MobiDBLite consensus disorder prediction 14 28 - -
Mupr16135g00001 1018 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 297 340 IPR028942 -
Mupr16135g00001 1018 CDD Tudor_AtPTM-like 39 87 IPR047365 -
Mupr16135g00001 1018 SMART PHD_3 418 461 IPR001965 -
Mupr16135g00001 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 468 IPR013083 -
Mupr16135g00001 1018 MobiDBLite consensus disorder prediction 146 161 - -
Mupr16135g00001 1018 MobiDBLite consensus disorder prediction 114 188 - -
Mupr16135g00001 1018 PANTHER PHD FINGER FAMILY PROTEIN 32 1018 - -
Mupr16135g00001 1018 SMART testlast3 193 253 IPR018501 -
Mupr16135g00001 1018 ProSiteProfiles Zinc finger PHD-type profile. 416 463 IPR019787 -
Mupr16135g00001 1018 ProSiteProfiles DDT domain profile. 193 253 IPR018501 -
Mupr16135g00001 1018 MobiDBLite consensus disorder prediction 1 30 - -
Mupr16135g00001 1018 Pfam DDT domain 194 250 IPR018501 -
Mupr16135g00001 1018 ProSitePatterns Zinc finger PHD-type signature. 419 460 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16135g00001 Mupr-Chr16135 1208 6432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16135g00001 24 585 PHD Transcription Factor Family AT5G35210 46.384 2.14e-139 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mupr16135g00001 DDT 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16135g00001 - - pvu:PHAVU_011G089300g 1513.05