Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16131g00002 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGCGGCATTTCTCGGGACACCTCCGAAGACGTTCTCAAAGTCCACTTCGCTAAGTACGGCGTCGTTTTGGACTCCACAATCTCCGTAGACCGCACCACTCGAATCCCTAGAGGTTTCGGCTTCGTCACTTTCTCTGATCTCTCCGCAGCCGATAAAGCTCTTAAAGACACGCATGTTATTCTTGGAAGAACGGTAGAAGTGAAAAAAGCAATTCCAAGAAGTGAACAACAGCAACACCAAAACCTATTACAGAGTAGAGGGGGTGGTAATTATAACAGTAGTAATGACTGTAGCAGTGACAACCTTAGGACTAAAAAGATTTTTGTAGGAGGATTACCCGCTGGTATATCTGAGGAGGAGTTTAAGAAGTACTTTGAGAGGTTTGGTCGAATAACAGATGTCGTAGTGATGCAGGACAGTGTAACTCACCGGCCCAGGGGTTTTGGGTTCATCACGTTTGATTCCGAGGAATCGGTTCAAAACGTTATGGTGAAGAGTTTTCATGATTTGAATGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCAAAAGAAGGGAACCATGGTTATGATGGTTTTAGTAAATTAAGAAATAAGAGTGAAAGAGGAGCTCCTAAAAGTTTTCCTCCTTATAGTCCTAGGAACATGCTCCCAGGTTTTGCTCCTTTGCCTTGGTATAGTGGCGATGGACTATATGCGTATGGGTCTAACACGAATGGTTGCTGGTACCCGATGGGTGGGTACGGGGGAAATGGATATGCTGTTCCGTCTGATGCTTCTAGGAACTTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTGCTCCGAATGTTGCATATGTCGGGGGTAGGATTGGAATAGTAGGTAGTGGTGCCGGATCTTGGGGGTACGGTGGCATTCTTGGGTCGGCAACAAATTTGAAATTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGACATCACCTCATGGTGTAAAGCAGGATGTTGACTCTTCAAGTTTGAAAGGAAGCAATGTTTCTACAAGCTTAGATATGGGTAATGGAGCGGGATGCTCCAATTTATTAGGAAAAGTGGATACAATTGCGTCTGGAAACGGATGGGAAAGTAGCAATTCCAACCCTTGTCTCCGCGGTTTGGGTTACACTGCCTAG 1227 0.4556 MNLKMDSDRAKLFVGGISRDTSEDVLKVHFAKYGVVLDSTISVDRTTRIPRGFGFVTFSDLSAADKALKDTHVILGRTVEVKKAIPRSEQQQHQNLLQSRGGGNYNSSNDCSSDNLRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRNKSERGAPKSFPPYSPRNMLPGFAPLPWYSGDGLYAYGSNTNGCWYPMGGYGGNGYAVPSDASRNFWYGPMMTGPQACQVPYASAAPNVAYVGGRIGIVGSGAGSWGYGGILGSATNLKFDQPFNANGFVPGNVTSPHGVKQDVDSSSLKGSNVSTSLDMGNGAGCSNLLGKVDTIASGNGWESSNSNPCLRGLGYTA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16131g00002 408 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 371 - -
Mupr16131g00002 408 SMART rrm1_1 120 192 IPR000504 GO:0003723
Mupr16131g00002 408 SMART rrm1_1 11 82 IPR000504 GO:0003723
Mupr16131g00002 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Mupr16131g00002 408 Gene3D - 2 115 IPR012677 -
Mupr16131g00002 408 MobiDBLite consensus disorder prediction 85 108 - -
Mupr16131g00002 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Mupr16131g00002 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Mupr16131g00002 408 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
Mupr16131g00002 408 MobiDBLite consensus disorder prediction 88 108 - -
Mupr16131g00002 408 CDD RRM2_Hrp1p 120 197 - -
Mupr16131g00002 408 MobiDBLite consensus disorder prediction 196 215 - -
Mupr16131g00002 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Mupr16131g00002 408 SUPERFAMILY RNA-binding domain, RBD 115 204 IPR035979 GO:0003676
Mupr16131g00002 408 MobiDBLite consensus disorder prediction 196 223 - -
Mupr16131g00002 408 Gene3D - 116 203 IPR012677 -
Mupr16131g00002 408 FunFam RNA-binding protein 1 115 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16131g00002 Mupr-Chr16131 6602 9384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16131g00002 12 257 Eukaryotic Initiation Factors Gene Family AT2G36660 25.287 1.48e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16131g00002 K14411 - gmx:100816822 625.55