Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1610g00003 ATGAGAACTCGAAATGCCGATTCTGCTTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGCCGAGAAAATCTCCTGCGGCAAAGCGCACCGCCGCCGCCAAAACCAGAAGCACCAAGAAGAAGGAGGTCTCGCCCGCACCCGATTCCAACCCTGAACAATCTCCACTGGAGCAGAAATCGTTAGGCAGTGCTAGCAGTACAAAATCTGGGAAGAAGAAGACTCCCGGGAGACCGAGAAGTAAAGCAATTGAAACTCTGAATTTGGAAGAACAATGTGAGGCAGTAGCTGAGGAAACTCCAATTGAAGATAATACTGAGGCAGCAGAGAAAGTGGAAGATGTTGAAGTAGTTGAGGGGGAGCAAGGTGTTGGGTCTGTTGGATTATTTGACGAGATGGAACAGAAACCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGTTTGCGAATCGGTGGAAAAGGCAAATGACATAATGGAAGTTGAAGTATCTGCTTCCCAGGATGCTTCTGTTCCTTTTAAGCGACCAGGGCGCCCCATTGTGGACCTCAATATATCTGCGGATAACGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAAGGAAAGGAAGAGTTGAAAGATCAAGAAGGAGACAAAGGGAAGGAAGGGTTGATAGAACAGGAAGGAGACAAAGGGAAGGAAGAGTTGAAAGAAAAGGTAGGAGACAGAGGAAAGGAAGAGTTGAAAGAAGAGGAAGGAGACAGAGGAAAGGAAGAGTTGACAGAAGAGGAAGGAGAGAAAGGGAAGGAAGAGTTGAAAGAACAGGGAGGAGAGAAAGGTAAGGAAGAGTTGAAAGAGCAGGAAGGACAGAAAGGAAAGGTTGAGTTGAAAGAACAGGAAGGAGACAAAGGAAAGGTCGAGTTGAAAGAACATGAAGGAGACAAAGGAAAGGAAAAGTTGAAAGAGCAGGAGCCAGAGAAAGCAAAGGGAGAGGAAACAAACCTTTTTGAACCCGAAGAGAGCACTGAGTCTTTTGGTGTAGAAGTGAAAGCCCAGATGCAAAAAGAAGATGTTACTCCCAGTAAAGATAGTGGTGAAGGACCAAAGGGTAGTGAAAAGTTAGATCTTGGAGAACAAGGGAGGGTGGAGCTTGTTGAAGAAGATCCGGAGGAGGATCCAGAGGAATCTCCAGAAGAAATTGAGGCATTGGATGAGGAGCACAGGGAATTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAACATGAGATTTTTGTTGGCGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGGAAGGTTTTTCAGAGAATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTTCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGAACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAGGCAGAAGCTGAAGGATTATGGTATTGAAGGGGTTGAAAACATTACACTTGTCCCTGATGTTCAACATGAGGGCTTAAGCCGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCAGATGTTATCTTTGGCCATGCTGAGCGAACGGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGCCGAAGATCATGTGAGGGAGCTATTTAAATCTTATGGTGAAATTGTAAGAATTGTGCTAGCACGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACGCATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTATCAAATCCTTTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAGTAGGTCATGCAAGGAGTGGAGCTTTTGCAAGATCAGGATCAGGAAGGGGGTTTGGGCGGGGAAGACCGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTACCATGGTGGATACAGTCAAGTTGGAAGAATGGGTTTTCGGGATGACCGTGATTTTAATATGCATCCGGGTTTCCGTCAGAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGGCATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCTAGACCTTTTCATGATAGAGCATGGTTTGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCACGGAGGCCCTACTCCCCAGGTGGACAGTTTGACACACCTTTTATGGGAAGGCATTTTGATGATCCATATCTATATGATGATAATATGCATGGAATGAAACGTCCATTTTATATGACCGACCCTGAACCTGATTACATGGGCCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCACCTATATTTCATGGAACTCGGCAACATGATTCTTTTGGGGCCGGCAGCAGACAGTACCCGCCTGACTATTATGGTTCTGATTATGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACCTTTGGCATGGACTGAGAATATAGTCGCTGTTGTTGTAGAGTATGAATATCTAATGCCGTGGGCATCTAAGGATGTGGTGGCGCCTTCGGTGGAGCATGAGATGACAACTACTCCGGGGGAGCAACAAGTAGCAGCAACCAATAAACAAGCAACAACGAGCAGTGACTTTGGTGGAGCAACGATGAACAATGAGTAG 2913 0.4545 MRTRNADSASKSATPKKTPPPRKSPAAKRTAAAKTRSTKKKEVSPAPDSNPEQSPLEQKSLGSASSTKSGKKKTPGRPRSKAIETLNLEEQCEAVAEETPIEDNTEAAEKVEDVEVVEGEQGVGSVGLFDEMEQKPMEVDEPVVEKVCESVEKANDIMEVEVSASQDASVPFKRPGRPIVDLNISADNEDCTGEKEGEKGKEELKDQEGDKGKEGLIEQEGDKGKEELKEKVGDRGKEELKEEEGDRGKEELTEEEGEKGKEELKEQGGEKGKEELKEQEGQKGKVELKEQEGDKGKVELKEHEGDKGKEKLKEQEPEKAKGEETNLFEPEESTESFGVEVKAQMQKEDVTPSKDSGEGPKGSEKLDLGEQGRVELVEEDPEEDPEESPEEIEALDEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSNKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGIEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWAEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRVGHARSGAFARSGSGRGFGRGRPPFNNRGNFNRDRSFYHGGYSQVGRMGFRDDRDFNMHPGFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPFHDRAWFGIPDGGPSEPIPPRRPYSPGGQFDTPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRQHDSFGAGSRQYPPDYYGSDYGRGSYSSYYGGDGSPLAWTENIVAVVVEYEYLMPWASKDVVAPSVEHEMTTTPGEQQVAATNKQATTSSDFGGATMNNE 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1610g00003 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 595 661 IPR000504 GO:0003723
Mupr1610g00003 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 565 IPR000504 GO:0003723
Mupr1610g00003 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 417 485 IPR000504 GO:0003723
Mupr1610g00003 970 SMART rrm1_1 416 489 IPR000504 GO:0003723
Mupr1610g00003 970 SMART rrm1_1 496 573 IPR000504 GO:0003723
Mupr1610g00003 970 SMART rrm1_1 594 669 IPR000504 GO:0003723
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 703 723 - -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 940 970 - -
Mupr1610g00003 970 FunFam Heterogeneous nuclear ribonucleoprotein Q 366 489 - -
Mupr1610g00003 970 Gene3D - 582 738 IPR012677 -
Mupr1610g00003 970 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 135 900 - -
Mupr1610g00003 970 SUPERFAMILY RNA-binding domain, RBD 416 559 IPR035979 GO:0003676
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 347 375 - -
Mupr1610g00003 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 495 580 IPR000504 GO:0003723
Mupr1610g00003 970 FunFam Heterogeneous nuclear ribonucleoprotein Q 580 733 - -
Mupr1610g00003 970 CDD RRM_SF 595 669 - -
Mupr1610g00003 970 CDD RRM_SF 497 560 - -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 188 328 - -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 1 141 - -
Mupr1610g00003 970 FunFam Heterogeneous nuclear ribonucleoprotein Q 495 579 - -
Mupr1610g00003 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 593 673 IPR000504 GO:0003723
Mupr1610g00003 970 Coils Coil 392 412 - -
Mupr1610g00003 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 415 493 IPR000504 GO:0003723
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 376 393 - -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 937 970 - -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 161 393 - -
Mupr1610g00003 970 Gene3D - 494 579 IPR012677 -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 47 71 - -
Mupr1610g00003 970 SUPERFAMILY RNA-binding domain, RBD 585 697 IPR035979 GO:0003676
Mupr1610g00003 970 Gene3D - 384 492 IPR012677 -
Mupr1610g00003 970 MobiDBLite consensus disorder prediction 103 117 - -
Mupr1610g00003 970 CDD RRM_SF 417 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1610g00003 Mupr-Chr1610 27818 39401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1610g00003 417 661 Eukaryotic Initiation Factors Gene Family AT2G23350 24.206 2.59e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1610g00003 - - gmx:100784338 1268.83