Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16072g00002 ATGAGGAATTTGGTGGAGCTAGAGGTGATAATGTTAATACAAACTTCTCTTCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAAATGCAATAAGTACCCTCTTGACTGGTGTAGGAAAGCTGAACCAGTGGAAGAAGATAGAAGGAGTGCTGATGATACTTACAGGTCAAGCTGTCTAGTTAGCCTTGGTCGGCCATCAACTTCTAGTATAATGACGGAAAATACTGCACCTAATATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAATTTTCAAGCTAGGGCCAACTAATATGCAGGCAAGTGCAAACTGCCCTTCAGTCATAAGTTCCGCTGCACATTTATCATCAGCTGAGGATCAGCCTGCTGATTTTCAAGTTAAGCATGAAACTGAAATGGTTAAAGATCCTACCGTGCCTTCAGTCTTATTTGATGGAGTAGCCAAAGGTGGCACACATAAAAACTTAGGTATTGACAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAACCTGAAATGGATGAAACTGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGATGCCACAATGGAAGAAGTAACGGAAAAGGATTTCTGCATTAATACTTTAAGAAGCCATGGACTTCTTAGAGAAGATCCTCTTGTAGATAATGTGGCTTCTGGGGAGGATGCTGTCACCACTGGTAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGGTCATTTAGACAGTTCACTGAACATGCTTTTATGTGATCACTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTTGAAAAAGTTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTCAAGGAGACAGTTATCAGATCACCAGGTACCCACAATGAATTGGGCAAATGCAGAACTGACTCAGTTAAGGCTGAATTGAATCCCATACTATTGATGTTGAGAGACACCAAGCCATATACAACTGGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGATTGGTCAGGCCCGACAAAAAGTTTCATTGGGAGAGTCATAGGAAGTCGTAGCTCTTCAGGAATCCTTTTCAGCCACAAAACCTCATACTCCTTGTTCCATATGGCTCTATATTCAGCTTCAGCACTACTACTTGCAACTACACTTTGTTCTTTACTTCTCCACGAAGAGAATACAAGAGATCCTATTGAACTTAGTTCCATTGGTAATTGGATTCAATGTCGAGAGGTTATAGATAGAGCCAATGGAACTATATGTGGAAAATGGCGCAGTGTGGGACTAAACACCACCCTTGAGGCTACAATTAAGGCAGCCTCCAAAGAGTCTGCAACTAAGACAGGATAG 1452 0.4139 MRNLVELEVIMLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNKYPLDWCRKAEPVEEDRRSADDTYRSSCLVSLGRPSTSSIMTENTAPNMVYRRKKLRKDSIFKLGPTNMQASANCPSVISSAAHLSSAEDQPADFQVKHETEMVKDPTVPSVLFDGVAKGGTHKNLGIDSVNDSCSSSKPNMEPEMDETGECSSSSVIVMDATMEEVTEKDFCINTLRSHGLLREDPLVDNVASGEDAVTTGNSCCSRSCKICGHLDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPGTHNELGKCRTDSVKAELNPILLMLRDTKPYTTGVRVGKGFQAEVLDWSGPTKSFIGRVIGSRSSSGILFSHKTSYSLFHMALYSASALLLATTLCSLLLHEENTRDPIELSSIGNWIQCREVIDRANGTICGKWRSVGLNTTLEATIKAASKESATKTG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16072g00002 483 ProSiteProfiles Zinc finger PHD-type profile. 260 310 IPR019787 -
Mupr16072g00002 483 SMART PHD_3 262 308 IPR001965 -
Mupr16072g00002 483 FunFam RING/FYVE/PHD zinc finger superfamily protein 248 328 - -
Mupr16072g00002 483 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 249 318 IPR047171 GO:0006338
Mupr16072g00002 483 Pfam PHD-finger 263 309 IPR019787 -
Mupr16072g00002 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 328 IPR013083 -
Mupr16072g00002 483 ProSitePatterns Zinc finger PHD-type signature. 263 307 IPR019786 -
Mupr16072g00002 483 SUPERFAMILY FYVE/PHD zinc finger 249 312 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16072g00002 263 308 C2H2 Transcription Factor Family AT3G01460 43.478 3.42e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr16072g00002 PHD 6.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr16072g00002 - - gmx:100813057 714.916