Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr16015g00001 ATGAGTAGGAAAGGGAAGAAGATGCGGGCTGAAAACTCACGATTTCCTGGATCGCGTTCGCTCCGCACTATCACGATCGTAGTCGCGACAGAGAACCGTGTTGACTGTCGCCCGTTGTCGGCACTCCGTTGCGCCGCTCTGGCCACTATTGACTACGTAGCATACATGAAGCGACTATTTAATATGATAAATGATCTTCCGACAGTATTTGAGGTTGTTACAGGGACGGCCAAGAAACCAGGGAAGGAAAAGTCATCTGTTGCAAATCATAACAGTAACAAAACGAAGTCAAACAAGCAGCAAGGTTTAGAATCAAAGTATCCAAAAGCAATGCAAGAAAAGGAAGAGGATGATGCGGGATTGGGTTTGGAAGAGGAAGACGAAGAGGAAGAGGAACATGGAGAGACTTTGTGTGGGGCATGTGGAGAGAGCTATGCTGCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 576 0.467 MSRKGKKMRAENSRFPGSRSLRTITIVVATENRVDCRPLSALRCAALATIDYVAYMKRLFNMINDLPTVFEVVTGTAKKPGKEKSSVANHNSNKTKSNKQQGLESKYPKAMQEKEEDDAGLGLEEEDEEEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr16015g00001 191 MobiDBLite consensus disorder prediction 80 129 - -
Mupr16015g00001 191 Pfam PHD-finger 138 187 IPR019787 -
Mupr16015g00001 191 ProSitePatterns Zinc finger PHD-type signature. 138 184 IPR019786 -
Mupr16015g00001 191 PANTHER CPG BINDING PROTEIN 57 190 IPR045104 GO:0006355|GO:0042393
Mupr16015g00001 191 FunFam PHD finger alfin-like protein 130 186 - -
Mupr16015g00001 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 186 IPR013083 -
Mupr16015g00001 191 CDD PHD_AL_plant 138 187 IPR044104 -
Mupr16015g00001 191 ProSiteProfiles Zinc finger PHD-type profile. 135 187 IPR019787 -
Mupr16015g00001 191 SMART PHD_3 137 185 IPR001965 -
Mupr16015g00001 191 MobiDBLite consensus disorder prediction 86 105 - -
Mupr16015g00001 191 SUPERFAMILY FYVE/PHD zinc finger 126 188 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr16015g00001 Mupr-Chr16015 1883 3765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr16015g00001 57 190 Alfin-like Transcription Factor Family AT3G42790 70.370 3.55e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr16015g00001 PHD 1.1e-10 CL0390