Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15991g00001 ATGGCTGCCGCCGGAGAAGTTAACGCTCCTGCTGTAGAAAAGCCAGTAGAGGAGGTGAAGGCCGCGGAGGCGCCGAAGCCTGCGAAGGAGAAAAAACCTAAGACTCCGAAAGAAAAGAAGCCAAGGCAGGCCAAAACTGCTTCACATCCTCCATATTTTCAGATGATCAAGGAGGCTTTGATCGCTCTGAACGAGAAGGGAGGATCGAGCCCTTACGCGATAGTCAAGTACATGGAGGAGAAGCACAAGGCGGTGCTTCCTGCGAATTTCAAGAAGATTCTAGGCCTGCAACTGAAGAACCAAGCTGCCAGAGGGAAACTCGTGAAGATCAAGGCTTCGTACAAGTTATCTGAAACCGCGAAGAAGGAGAAGAAAGAGACTACGACCAAGGTGACGAAGGCCAACGCAGAGAAGAAGGAACCGCGCCCGAAACGAAGCAAAACTGTAACCGCCGCTTCTCCAAAGAGCAAGAAAACCGAGGCGGTTAAAAAGGTCGCGAAGAAGGTTGGGCCGAAGAAGACGAAGAAAGTGTCTACGCCCGCAAAGCCCAAGCAGCCCAAGTCCATCAGGTCTCCGTCCAAGAGGGCCCGTAAAACTGCCGTTGCTGTGGCGGAAACTCTGTTGCATAATATATGTAGATATGTAAAGAAAGGAAGCAGAAATTAA 666 0.5075 MAAAGEVNAPAVEKPVEEVKAAEAPKPAKEKKPKTPKEKKPRQAKTASHPPYFQMIKEALIALNEKGGSSPYAIVKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLSETAKKEKKETTTKVTKANAEKKEPRPKRSKTVTAASPKSKKTEAVKKVAKKVGPKKTKKVSTPAKPKQPKSIRSPSKRARKTAVAVAETLLHNICRYVKKGSRN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15991g00001 221 Coils Coil 117 137 - -
Mupr15991g00001 221 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr15991g00001 221 MobiDBLite consensus disorder prediction 16 34 - -
Mupr15991g00001 221 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr15991g00001 221 SUPERFAMILY "Winged helix" DNA-binding domain 45 128 IPR036390 -
Mupr15991g00001 221 PANTHER HISTONE H1 21 187 - -
Mupr15991g00001 221 MobiDBLite consensus disorder prediction 1 51 - -
Mupr15991g00001 221 Gene3D - 44 130 IPR036388 -
Mupr15991g00001 221 CDD H15 46 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr15991g00001 221 MobiDBLite consensus disorder prediction 113 201 - -
Mupr15991g00001 221 PRINTS Histone H5 signature 175 192 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr15991g00001 221 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr15991g00001 221 PRINTS Histone H5 signature 138 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr15991g00001 221 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr15991g00001 221 MobiDBLite consensus disorder prediction 115 146 - -
Mupr15991g00001 221 FunFam Histone H1 44 136 - -
Mupr15991g00001 221 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15991g00001 Mupr-Chr15991 1378 2490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15991g00001 36 135 Single Myb Histone (SMH) Gene Family AT1G72740 36.190 3.99e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15991g00001 K11275 - gmx:100500169 253.062