Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1591g00002 ATGTCTCACGTTGTTGCTTGTCCACCCCAGAGCTCGGAGTGTTGCATCCATGTGAATAAGGATGTGGATGAGACCTACTGCAGGATTTGCCACCTCACCATGGACACTCCCTTTCACCTTGGTTGTTCTTGTAAAAATGACTTGGCTGTTTCACACAAGCATTGTGCTGACCTTTGGTTCAAGATCAAGGGTAACAAAATTTGTGAAATCTGTGGATCCATTGCACGCAATGTAGCTGATGTAGTTGAAGTGGAAATGAATTCTCACCGGAATGAAGCAAATAATGATGCCTCGATGGTAGCACCAAGTGGACCCGCTCCCCCAGAAGAAGCTCCACATTTGTGGCAGGGTAACCGCTTCTTGAATCTCCTTCTTGCCTTTATGGCTTTTGCTTTTGTCATTTCCTGGTTTTTTCACTTCAATATGCCCTCATGA 435 0.4529 MSHVVACPPQSSECCIHVNKDVDETYCRICHLTMDTPFHLGCSCKNDLAVSHKHCADLWFKIKGNKICEICGSIARNVADVVEVEMNSHRNEANNDASMVAPSGPAPPEEAPHLWQGNRFLNLLLAFMAFAFVISWFFHFNMPS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1591g00002 144 ProSiteProfiles Zinc finger RING-CH-type profile. 19 78 IPR011016 GO:0008270
Mupr1591g00002 144 PANTHER ZINC FINGER, RING-CH-TYPE 20 143 - -
Mupr1591g00002 144 SUPERFAMILY RING/U-box 21 74 - -
Mupr1591g00002 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 74 IPR013083 -
Mupr1591g00002 144 SMART ringv_2 26 72 IPR011016 GO:0008270
Mupr1591g00002 144 Pfam RING-variant domain 27 71 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1591g00002 Mupr-Chr1591 11001 11517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1591g00002 13 144 C3H Transcription Factor Family AT5G05830 54.676 9.95e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1591g00002 - - gmx:100816407 165.622