Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15915g00001 ATGGATATTTTTAAGCAGAGGAAGAAAAACACAGGCCGCAAAAAGATTGAGATTAAGAAGCTTGACAAGGCTAGCAACAAGCAAGTTACGTTCTCAAAAAGAAGAACAGGACTATTCAAAAAAGCCAGTGAACTCTGCATTTTATGCGACGTTCATGTAGCCATAATTGTGTTTTCTCCCGCTGACAAATTGTTCTGCTTTGGCCATCCAGATATTGATACTATTATTGCTCGCTATTTCAAAGGTACCGCAGACTTTGAATCCACAAAGTCAAGAGGGAAATTGGTGTCATATGAAGAGCACAACAGGCAATACGAGGAGTCAATGAAGAAGTTGGAGTTGGAAAAAAAGAATCTGTCACAAACTGAAACTTTGGCTAAGAATTGGAATAGAAGGTGGTGGGATGATTCAATTGATCAGATGACTGACGATCAGTTGGAGCAGTTTATGGTATCCGTTTATGAGTTAAGAAAGAAATTAGCTGAAAGAGCAGGCAAAGAAATACTTTTTACATTAGAGGAATAA 525 0.381 MDIFKQRKKNTGRKKIEIKKLDKASNKQVTFSKRRTGLFKKASELCILCDVHVAIIVFSPADKLFCFGHPDIDTIIARYFKGTADFESTKSRGKLVSYEEHNRQYEESMKKLELEKKNLSQTETLAKNWNRRWWDDSIDQMTDDQLEQFMVSVYELRKKLAERAGKEILFTLEE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15915g00001 174 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mupr15915g00001 174 Coils Coil 95 132 - -
Mupr15915g00001 174 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Mupr15915g00001 174 PANTHER MADS BOX PROTEIN 13 161 - -
Mupr15915g00001 174 Gene3D - 24 126 IPR036879 GO:0003677|GO:0046983
Mupr15915g00001 174 CDD MADS_MEF2_like 12 85 IPR033896 GO:0000977|GO:0045944
Mupr15915g00001 174 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mupr15915g00001 174 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Mupr15915g00001 174 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mupr15915g00001 174 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mupr15915g00001 174 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mupr15915g00001 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15915g00001 Mupr-Chr15915 2649 3271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15915g00001 12 161 Type I MADS-box Gene Family AT2G24840 41.026 1.62e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr15915g00001 SRF-TF 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15915g00001 - - gmx:100782074 267.314