Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr15868g00002 | ATGGAAGTACCCCCACTTCCTCAAGTTTTAGATGGAATGGCAGATCCTGCTAGTTATGGGATTCTGGAGCGTGATGTTGAGCAAGCACTTGTTGCCTTAAAGAAAGGAACTCAATTAATAAAGTACAGCCGAAAAGCGAAGCCAAAAGTTTGCCCATTCAGACTTTCTCCGGATGAAACAACACTAATTTGGATTTCTCATAAGAAGGAAAGGAATTTGAAATTATCTTTGGTTTCTTGTATTATCCCTGGACAAAGAACTGCTGTCTTTAGAAGATATTTGCAACCAGAAAAAGATTATCTTTCACTTTCACTTGTTTATAATAATGGGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGGTAGAGGTATGGTTTAAAGGCCTTAACACATTAATTTCTACTGGAAAGCGTAATTATAGGCGCATTGGAAGTGAATTATTTGATGATGATGTTGATTGCAGTCAAAATGGTCGTCCCCTTAGTACAACACTAGAATTTGCCATAAGCATTGCTCGAAACAGTGTCTCTTTTAACTTTGCTTCTCGTGAGTCTTCATTGAATTTGGCAAGCACAAATGTGGCGTTAGAGCGTGCTAATAACATGCAAGCAAGAACAAGTATTGGAGATGGTTTTCGCATTAGTGTGTCAAGTACACCTAGTTGTTCAAGTGGGGGATCAGGACCAGATGACATAGAATCACTCGGTGATGTTTATATGTGGGGAGAGGTTTGGGCAGATGCAGTTTCATCTGAAGGATTTTGCACTCAATCCCCTTCTACAATAGATGTGTTGATTCCCAAGCCATTAGAGACAAGTGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGAGACACATTGCTTTAGTGACTAGGCAAGGGGAGGTTTTCACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATCAATAGAGATTTTGGTCGCCCTCAAATTGTTGAGGTTTTGGCAGTTACTAACATAGATTTTGTTGCTTGTGGAGAGAATCATACATGTGCTGTATCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATACAATGTTGGAGTTCTTGGTCATGGAACTGATGTTAGCCATTGGATACCAAAGAGGGTTAGTTGTGGTCCTTTAGAAGGACTTCAAGTTATATCAATTGCATGTGGCACGTGGCATTCAGCCCTAGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTATTAGGTCATGGGAATAGAATGAGTGTGTCATATCCAAAGGAGGTGCAATTATTAAGTGGATTGAAAACAATTAAGGTTGCATGTGGAGTATGGCACACTGCGGCTATTGTAGAGGTTTCTTTTCAATCTGGCTCAAATGTTTCATCCAGAAAGCTTTTTACATGGGGAGATGGTGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCCACATGTGTCTCTACACTCATTGAATACAATTTCCACCAAATAGCATGTGGACACACTATGACCATTGCCCTCACTACATCTGGTCATGTCTTCACTATGGGACACACTGAAAATGGTCAACTAGGAAACCCTTTGGCTGATGGAAAGGTACCTATCCTAGTGCAAGATAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGATCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAACTATTTACTTGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCTCCAACATTGGTGGAATCCCTAAAAGATAGGCATGTGAAGAACATCTCTTGTGGCTCAAACTTCACATCTTGCATATGCATCCATAAGTGGGTCTCTGGAATTGACCAATCTGTTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGCATTGTCATAGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCTTTAGCTCCAACACCAGGAAAACCTCATCGAGTGTGTGACTCTTGTTATAATAAGCTTAAAGCTGTTGAGGCAGGTACTGCAAGCAATCTTAATAGAAAAATTACTAGTACTGCACCTCGTAATTCAATAGATGCTAGAGAAAGATTTGGCCAAGGAGAAATAAAGTCTGCAAGACTTATTTTGCCTCCTATCATAGACCCAATGAAATACCATGAGACAAAGTCTAGTAAGTTAGGAAACAAATATGATTATTCTTCCTTGGTTCTGACTTCCCAAGTTCCATCTCTTCTACAATTGAATGATATTGCATTTGGAAGTTCAACAACTTCCAATCAAAATGTTTTAAAGCCTGCTATAGCTTCTAGTCCACAACTAATTCTACCTCTCAATTCAAGACCAGCATCTCCTTATGCAAGAAGGCCAAGTCCACCACGATCTTCTAGCACTCATGGATTTTCTAAAAGCCTTGTTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAATTGCAAAACCAAATCCGGAGTTTGAAGCTAAGAAATGAAAGAGAAATTCAAAAGCTCCAAAAAAATGTCACAGCAGCTTCCTCCTTGGCTGCAGTGGAATCTTCTAAGCATAGAGAAATGAAAGAATTTTTTGAGTCTACGATAGATCAGATGAAGGAAATGATTGAGAAATTGCCACAAGAAGTTTTAGACAATGAAAATTGGAAAATTGTGCTTACCCAGGCTGAAGATTTTCTAAAAGAAAATTTAGATTTGGAACCACCTTTGGTATCATCATCTATGAAGTCTCAACAACAAAATCCACCTAATACATCTGACTTAGGTAGTAGCGCTTCTAAACTGAAAGAACGTAGAATAGAAGAAAATAATGAAACTGTGGGAGTTGGCCCATCATCACAAGATGGAGGACATGTTCTTCAAGAAAGCCATAGTTCATCTTTATCCCATGATTCTTCAAGACCAGGAAAAGAAGGAGAAACGCAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGACAGTAATAGTAAAGCCTGGTGGTGTCAAGATTTTCAAACGAGTTAGATTCAGTAAACGGAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAGGAAATATAGTCCACAAGTTATAAATTCCGAAGTTGCCGAGTCATCTAACACTCCGTCGTCGTCGCTACCACCTACTGAAGAAAATATTGAGTCAGCGTCTTCCTAA | 3267 | 0.3915 | MEVPPLPQVLDGMADPASYGILERDVEQALVALKKGTQLIKYSRKAKPKVCPFRLSPDETTLIWISHKKERNLKLSLVSCIIPGQRTAVFRRYLQPEKDYLSLSLVYNNGERTLDLICKDKDEVEVWFKGLNTLISTGKRNYRRIGSELFDDDVDCSQNGRPLSTTLEFAISIARNSVSFNFASRESSLNLASTNVALERANNMQARTSIGDGFRISVSSTPSCSSGGSGPDDIESLGDVYMWGEVWADAVSSEGFCTQSPSTIDVLIPKPLETSVVLDVQQIASGVRHIALVTRQGEVFTWGEESGGRLGHGINRDFGRPQIVEVLAVTNIDFVACGENHTCAVSTSDDLFSWGDGTYNVGVLGHGTDVSHWIPKRVSCGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRMSVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVSFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHVFTMGHTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELFTWGKGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGIDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHSCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEAGTASNLNRKITSTAPRNSIDARERFGQGEIKSARLILPPIIDPMKYHETKSSKLGNKYDYSSLVLTSQVPSLLQLNDIAFGSSTTSNQNVLKPAIASSPQLILPLNSRPASPYARRPSPPRSSSTHGFSKSLVDSLRKTNELLNQEVSKLQNQIRSLKLRNEREIQKLQKNVTAASSLAAVESSKHREMKEFFESTIDQMKEMIEKLPQEVLDNENWKIVLTQAEDFLKENLDLEPPLVSSSMKSQQQNPPNTSDLGSSASKLKERRIEENNETVGVGPSSQDGGHVLQESHSSSLSHDSSRPGKEGETQVIEQFEPGVYVTVIVKPGGVKIFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSPQVINSEVAESSNTPSSSLPPTEENIESASS | 1088 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr15868g00002 | 1088 | MobiDBLite | consensus disorder prediction | 932 | 952 | - | - | |
| Mupr15868g00002 | 1088 | MobiDBLite | consensus disorder prediction | 967 | 991 | - | - | |
| Mupr15868g00002 | 1088 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 350 | 400 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 297 | 345 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 572 | 619 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 404 | 453 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 469 | 515 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 518 | 567 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Gene3D | - | 464 | 635 | IPR009091 | - | |
| Mupr15868g00002 | 1088 | Gene3D | - | 192 | 463 | IPR009091 | - | |
| Mupr15868g00002 | 1088 | MobiDBLite | consensus disorder prediction | 932 | 1001 | - | - | |
| Mupr15868g00002 | 1088 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 636 | 695 | IPR013083 | - | |
| Mupr15868g00002 | 1088 | CDD | PH_PLC_plant-like | 24 | 136 | - | - | |
| Mupr15868g00002 | 1088 | MobiDBLite | consensus disorder prediction | 799 | 823 | - | - | |
| Mupr15868g00002 | 1088 | SMART | fyve_4 | 621 | 690 | IPR000306 | GO:0046872 | |
| Mupr15868g00002 | 1088 | SUPERFAMILY | RCC1/BLIP-II | 237 | 624 | IPR009091 | - | |
| Mupr15868g00002 | 1088 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1002 | 1056 | IPR013591 | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 571 | 622 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PRINTS | Chromosome condensation regulator RCC1 signature | 566 | 587 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PRINTS | Chromosome condensation regulator RCC1 signature | 407 | 421 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PRINTS | Chromosome condensation regulator RCC1 signature | 299 | 315 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PRINTS | Chromosome condensation regulator RCC1 signature | 349 | 365 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PRINTS | Chromosome condensation regulator RCC1 signature | 508 | 526 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PRINTS | Chromosome condensation regulator RCC1 signature | 391 | 407 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | MobiDBLite | consensus disorder prediction | 1063 | 1088 | - | - | |
| Mupr15868g00002 | 1088 | SUPERFAMILY | PH domain-like | 25 | 135 | - | - | |
| Mupr15868g00002 | 1088 | CDD | FYVE_like_SF | 633 | 685 | - | - | |
| Mupr15868g00002 | 1088 | Gene3D | - | 24 | 143 | IPR011993 | - | |
| Mupr15868g00002 | 1088 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 209 | 458 | - | - | |
| Mupr15868g00002 | 1088 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 443 | 453 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 404 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | FYVE zinc finger | 623 | 689 | IPR000306 | GO:0046872 | |
| Mupr15868g00002 | 1088 | SUPERFAMILY | FYVE/PHD zinc finger | 623 | 691 | IPR011011 | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 405 | 456 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 627 | 689 | IPR017455 | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 297 | 348 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | Pfam | Pleckstrin homology domain | 27 | 135 | IPR001849 | - | |
| Mupr15868g00002 | 1088 | Coils | Coil | 826 | 860 | - | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 519 | 570 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 283 | 293 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 70 | 886 | - | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 467 | 518 | IPR000408 | - | |
| Mupr15868g00002 | 1088 | ProSiteProfiles | BRX domain profile. | 1002 | 1057 | IPR013591 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr15868g00002 | Mupr-Chr15868 | 10825 | 17885 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr15868g00002 | 999 | 1068 | Major Intrinsic Protein MIP | AT1G31880 | 34.286 | 3.54e-09 | 58.2 |