Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15860g00002 ATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGGATGAAGACAATAAGGGGAACTACGCAAAAGCGTTTCAGCTTTACATGCACGCGTTGGAGTATTTCAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACTGAGTACCTGCGCCGGGCCGAGGAGATCCGCTCCGTCCTCGATGGGCCTGGCGGCCCGGCCTCTAACGGGGACGCCGCGGTCGCCACGCGGCCCAAGACCAAGCCCAAGGATGGGGAAGGCGATGGGGAGGATCCCGAGCAGGCCAAGCTTCGGGCCGGACTCAACTCCGCGATCGTGAGGGAGAAGCCCAACGTCAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAACAGGCCTTGCAGGAAGCGGTTATCTTGCCCGTCAAGTTTCCTCAGTTCTTCACTGGTAAACGACGACCTTGGAGAGCCTTTTTGTTGTACGGACCACCGGGAACAGGTAAATCGTATTTGGCCAAGGCCGTTGCGACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCATCTATCATATTTGTTGATGAAATAGATTCTCTGTGTGGTCAGCGAGGAGAAGGAAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGTGCACCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAACATTTGGCTCGCAGGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTACGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGAGTGCAGTACAAACTACAATGCAGGATCTTGCTGCAAAAGGACTTGCTTCTAAGATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTTCTTGCTAGACAAAGACCTACAGTAAGCAAGGCTGACCTTGACGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1221 0.4898 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMHALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRSVLDGPGGPASNGDAAVATRPKTKPKDGEGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQVHLGDTPHNLTESDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFTNPEGMWIPCGPKQQSAVQTTMQDLAAKGLASKILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15860g00002 406 SMART smart 2 79 IPR007330 -
Mupr15860g00002 406 MobiDBLite consensus disorder prediction 90 107 - -
Mupr15860g00002 406 Pfam ATPase family associated with various cellular activities (AAA) 165 280 IPR003959 GO:0005524|GO:0016887
Mupr15860g00002 406 FunFam vacuolar protein sorting-associated protein 4A 276 386 - -
Mupr15860g00002 406 Gene3D - 282 382 - -
Mupr15860g00002 406 FunFam Vacuolar protein sorting-associated protein 4 123 283 - -
Mupr15860g00002 406 PANTHER AAA DOMAIN-CONTAINING 281 404 - -
Mupr15860g00002 406 CDD MIT_VPS4 4 74 IPR045253 -
Mupr15860g00002 406 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Mupr15860g00002 406 Gene3D - 122 280 IPR027417 -
Mupr15860g00002 406 SUPERFAMILY MIT domain 2 75 IPR036181 -
Mupr15860g00002 406 SMART AAA_5 160 309 IPR003593 GO:0016887
Mupr15860g00002 406 MobiDBLite consensus disorder prediction 73 107 - -
Mupr15860g00002 406 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Mupr15860g00002 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 387 IPR027417 -
Mupr15860g00002 406 Gene3D - 6 74 - -
Mupr15860g00002 406 Pfam Vps4 C terminal oligomerisation domain 339 403 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15860g00002 Mupr-Chr15860 2070 6123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15860g00002 159 327 Calmodulin-binding Proteins AT3G56690 33.163 7.89e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15860g00002 K12196 - gmx:100801165 773.081