LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr15827g00001	ATGAAGAGACTGAGAGAAGTCAAAGAAGTGACACGAAACATCATGAATACCCAAAATAGTCCATCGGAAGAATTATGTTTTGAGTGCAAGAGCTGTGAGCCCAAGTTCGCATTGGATGGACACAACACTAACCACAATAAGCCAAAACTTGAGGATGGGAATGAGAATGAGAAACAACATGCAAAAGTACACGAGTGCTCAATTTGTGGTGAGACATTCTCTCGGGGACAGGCATTGGGAGGCCACATGAGAAAACACAAAGATCGACTTTTAAAGAGATCCAATAATAGTAGTCAAAAGATTATGTTCTACGATCTCAACTTGACTCCTTTGCAGAATGACTTGAAGCAGAGAGACATGGAGGTTTTTGAGAGCATAGATTTGGCAAATTGTCTAATGCTGCTCTCTGGTCCCCAAGAAAGCAAGAAGCTACAACAACAAAATTATGAGGCTATGGAATTTGGGTGCAAGACATGCAACCGCAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCACAGGGCTAGCCACAAAAGGTCAAAACTAGACAAAGCACATGCTATGTCTCTAAGCTTGGAAAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAGGAATTCTCGTTGGGACAGGCACTGGGAGGTCACATGAGAAGGCATAGAGCTTCCATCAACGAAGAGGTTGTTACAAAAGTACCAGTTTTGGAAAGATCGAATAGTATGAGGGTAAATATGTGCTTGGACTTGAACTTAACACCGTTAGAGAACGACTTGAAGTTATTGTTTGGAAAGATGGCACCCAATGCTGCTGCCTTAGTCTGA	822	0.427	MKRLREVKEVTRNIMNTQNSPSEELCFECKSCEPKFALDGHNTNHNKPKLEDGNENEKQHAKVHECSICGETFSRGQALGGHMRKHKDRLLKRSNNSSQKIMFYDLNLTPLQNDLKQRDMEVFESIDLANCLMLLSGPQESKKLQQQNYEAMEFGCKTCNRKFSSFQALGGHRASHKRSKLDKAHAMSLSLENKPKMHECSICGQEFSLGQALGGHMRRHRASINEEVVTKVPVLERSNSMRVNMCLDLNLTPLENDLKLLFGKMAPNAAALV	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr15827g00001	273	ProSiteProfiles	Zinc finger C2H2 type domain profile.	154	181	IPR013087	-
	Mupr15827g00001	273	Gene3D	Classic Zinc Finger	151	220	-	-
	Mupr15827g00001	273	SMART	c2h2final6	64	86	IPR013087	-
	Mupr15827g00001	273	SMART	c2h2final6	154	176	IPR013087	-
	Mupr15827g00001	273	SMART	c2h2final6	198	220	IPR013087	-
	Mupr15827g00001	273	Gene3D	Classic Zinc Finger	53	119	-	-
	Mupr15827g00001	273	ProSitePatterns	Zinc finger C2H2 type domain signature.	156	176	IPR013087	-
	Mupr15827g00001	273	SUPERFAMILY	beta-beta-alpha zinc fingers	62	176	IPR036236	-
	Mupr15827g00001	273	ProSitePatterns	Zinc finger C2H2 type domain signature.	66	86	IPR013087	-
	Mupr15827g00001	273	MobiDBLite	consensus disorder prediction	38	57	-	-
	Mupr15827g00001	273	ProSitePatterns	Zinc finger C2H2 type domain signature.	200	220	IPR013087	-
	Mupr15827g00001	273	ProSiteProfiles	Zinc finger C2H2 type domain profile.	198	220	IPR013087	-
	Mupr15827g00001	273	MobiDBLite	consensus disorder prediction	40	57	-	-
	Mupr15827g00001	273	SUPERFAMILY	beta-beta-alpha zinc fingers	195	222	IPR036236	-
	Mupr15827g00001	273	ProSiteProfiles	Zinc finger C2H2 type domain profile.	64	86	IPR013087	-
	Mupr15827g00001	273	Pfam	C2H2-type zinc finger	63	88	-	-
	Mupr15827g00001	273	Pfam	C2H2-type zinc finger	198	222	-	-
	Mupr15827g00001	273	Pfam	C2H2-type zinc finger	154	178	-	-
	Mupr15827g00001	273	PANTHER	ZINC FINGER PROTEIN ZAT5	19	114	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr15827g00001	Mupr-Chr15827	6964	12522	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr15827g00001	121	264	C2H2 Transcription Factor Family	AT2G37430	48.408	1.31e-42	142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Mupr15827g00001		zf-C2H2_6	1.3e-09	CL0361