Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15792g00001 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCATCTGACTCGGGTGAGGTTGAGAAATCGAAACCTAGAACTGGGTCTATGAACGGCGATCAGAAACTGAACAACGGTGTGTTCAACCACCAAGATAGAGTTGCTAGCACCATGTCAGTGCCTAATAGCAATTATAATAACTACAAGGCCCAAATGGGTCAGATGCACACGAATGGGGTGAATAATGATGGGTATGGGATGAATGGGGTCAGGAGTGGGGAGGATGGGGGTGAGAGTTTCAAGCGTGAGATAAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAGTTTGTGCCTCCATCACTAGCCAATACTCATGGCTACCTAGCTGGACCTGGTGCTGGATTTGGTTACCCTAATAATTTTATTCTGCTCAATGGTTATGGTAATGCTAACGGTCAAACTAACAGAAGGAGGAAGAATGGCTATAATCAAGGGAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAATTGGTTACTGAAGAGCAGCTGGCTGCGCTTTTTCTTAACTGTGGCCAGGTTGTTGACTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACTGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTGTCTGGAACCATGCTTGGGTATTACCCATTGAGAGTGCTACCTTCAAAAACTGCTATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCCATTTGTGGAGAGGTTCAACGGTTGAGGATTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACACTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTCCCCATAAGGGTAAGTCCATCGAAGACACCAGTGCGCGCGCGTGCTCCTCGTACTTCTATGCACTGA 1134 0.4462 MAVAENVGAKIGSSSQNLDNSVVSSDSGEVEKSKPRTGSMNGDQKLNNGVFNHQDRVASTMSVPNSNYNNYKAQMGQMHTNGVNNDGYGMNGVRSGEDGGESFKREIRDLEELLSKLNPMAEEFVPPSLANTHGYLAGPGAGFGYPNNFILLNGYGNANGQTNRRRKNGYNQGKRRVNHKIDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRILGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRARAPRTSMH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15792g00001 377 CDD RRM2_CID8_like 285 366 IPR034825 -
Mupr15792g00001 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 112 370 - -
Mupr15792g00001 377 MobiDBLite consensus disorder prediction 1 47 - -
Mupr15792g00001 377 FunFam Polyadenylate-binding protein-interacting protein 11 155 269 - -
Mupr15792g00001 377 MobiDBLite consensus disorder prediction 9 28 - -
Mupr15792g00001 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Mupr15792g00001 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Mupr15792g00001 377 CDD RRM1_CID8_like 190 269 IPR034823 -
Mupr15792g00001 377 Gene3D - 153 269 IPR012677 -
Mupr15792g00001 377 Gene3D - 276 372 IPR012677 -
Mupr15792g00001 377 FunFam Polyadenylate-binding protein-interacting protein 10 283 361 - -
Mupr15792g00001 377 SUPERFAMILY RNA-binding domain, RBD 164 268 IPR035979 GO:0003676
Mupr15792g00001 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Mupr15792g00001 377 SUPERFAMILY RNA-binding domain, RBD 279 370 IPR035979 GO:0003676
Mupr15792g00001 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Mupr15792g00001 377 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Mupr15792g00001 377 SMART rrm1_1 290 361 IPR000504 GO:0003723
Mupr15792g00001 377 SMART rrm1_1 193 263 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15792g00001 Mupr-Chr15792 2432 8506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15792g00001 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 4.82e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15792g00001 - - gmx:106794116 705.671