Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15715g00004 ATGGTGCAGATGCAAATATTCGTGAAGACCTTGACGGGGAAGACCATAACACTTGAGGTGGAGAGTTCAGACACGATAGACAACGTGAAGGCAAAGATTCAGGACAAGGAAGGGATACCCCCAGACCAGCAGCGTCTGATATTCGCGGGGAAGCAACTGGAGGATGGGCGGACCCTGGCGGACTACAATATTCAGAAGGAGTCAACCCTACACCTTGTCCTGCGTCTCCGTGGGGGCATGCAGATATTCGTGAAGACCCTGACAGGAAAGACCATAACCCTTGAGGTGGAGAGCTCAGACACGATTGAGAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATTCCACCAGACCAGCAGAGGCTGATTTTTGCTGGGAAGCAGCTGGAGGATGGACGCACACTGGCTGACTACAATATCCAGAAGGAGTCTACCCTTCACCTAGTACTGCGTCTCAGGGGTGGCATGCAGATATTTGTCAAGACCTTGACGGGGAAGACCATCACTCTTGAGGTTGAGAGTTCTGACACTATTGACAATGTCAAGGCCAAAATTCAGGACAAGGAAGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTTCGTGGTGGCTCTCCTTTCTAA 705 0.5135 MVQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSPF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15715g00004 234 CDD Ubl_ubiquitin 156 231 - -
Mupr15715g00004 234 ProSitePatterns Ubiquitin domain signature. 106 131 IPR019954 -
Mupr15715g00004 234 SUPERFAMILY Ubiquitin-like 79 155 IPR029071 -
Mupr15715g00004 234 ProSiteProfiles Ubiquitin domain profile. 80 155 IPR000626 GO:0005515
Mupr15715g00004 234 ProSitePatterns Ubiquitin domain signature. 182 207 IPR019954 -
Mupr15715g00004 234 Gene3D - 1 79 - -
Mupr15715g00004 234 Gene3D - 80 155 - -
Mupr15715g00004 234 Gene3D - 156 233 - -
Mupr15715g00004 234 FunFam Polyubiquitin 3 80 155 - -
Mupr15715g00004 234 CDD Ubl_ubiquitin 4 79 - -
Mupr15715g00004 234 ProSiteProfiles Ubiquitin domain profile. 4 79 IPR000626 GO:0005515
Mupr15715g00004 234 SUPERFAMILY Ubiquitin-like 4 79 IPR029071 -
Mupr15715g00004 234 CDD Ubl_ubiquitin 80 155 - -
Mupr15715g00004 234 ProSiteProfiles Ubiquitin domain profile. 156 231 IPR000626 GO:0005515
Mupr15715g00004 234 SMART ubq_7 80 151 IPR000626 GO:0005515
Mupr15715g00004 234 SMART ubq_7 4 75 IPR000626 GO:0005515
Mupr15715g00004 234 SMART ubq_7 156 227 IPR000626 GO:0005515
Mupr15715g00004 234 FunFam Polyubiquitin 3 4 79 - -
Mupr15715g00004 234 FunFam Polyubiquitin 3 156 231 - -
Mupr15715g00004 234 Pfam Ubiquitin family 158 229 IPR000626 GO:0005515
Mupr15715g00004 234 Pfam Ubiquitin family 82 153 IPR000626 GO:0005515
Mupr15715g00004 234 Pfam Ubiquitin family 6 77 IPR000626 GO:0005515
Mupr15715g00004 234 PRINTS Ubiquitin signature 35 55 IPR019956 -
Mupr15715g00004 234 PRINTS Ubiquitin signature 56 77 IPR019956 -
Mupr15715g00004 234 PRINTS Ubiquitin signature 14 34 IPR019956 -
Mupr15715g00004 234 PANTHER UBIQUITIN 4 81 - -
Mupr15715g00004 234 ProSitePatterns Ubiquitin domain signature. 30 55 IPR019954 -
Mupr15715g00004 234 SUPERFAMILY Ubiquitin-like 154 232 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15715g00004 Mupr-Chr15715 28398 29102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15715g00004 4 80 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.63e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15715g00004 K08770 - msin:131221376 444.121