Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1562g00010 ATGTTCACCACAATTGCCATATACAAAGCAGGAATCATCCCAGTTCAGTATCGCCGTGTTCCGTGCATCAAAACTGGGGGCGTCAAGTTCGAGATGGGAGGGAACCCTTATTGGCTTCAAGTTTTGTTGTACAACGTTGGCAACGTTGGTGATGTTTCTCAAGTTAGCATCAAAGGGTCTAACACTGCCTGGCTCTCTATGTCACGCGTTTGGGGACAAAATTGGGTTACTACTAGCGATGGTAAAAGGTTGGAGTTTGACAATGTTGCCCCTGCCCATTGGCAATTCCGGCAGAGCTACGAGGGCAACAACAACTTTTAG 321 0.4735 MFTTIAIYKAGIIPVQYRRVPCIKTGGVKFEMGGNPYWLQVLLYNVGNVGDVSQVSIKGSNTAWLSMSRVWGQNWVTTSDGKRLEFDNVAPAHWQFRQSYEGNNNF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1562g00010 106 Gene3D - 26 106 IPR036749 -
Mupr1562g00010 106 PRINTS Expansin signature 26 38 IPR002963 GO:0009664
Mupr1562g00010 106 PRINTS Expansin signature 38 59 IPR002963 GO:0009664
Mupr1562g00010 106 PRINTS Expansin signature 2 15 IPR002963 GO:0009664
Mupr1562g00010 106 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 37 102 IPR007117 -
Mupr1562g00010 106 SUPERFAMILY PHL pollen allergen 24 102 IPR036749 -
Mupr1562g00010 106 Pfam Expansin C-terminal domain 28 85 IPR007117 -
Mupr1562g00010 106 PRINTS Expansin/Lol pI family signature 64 78 IPR007118 GO:0005576
Mupr1562g00010 106 PRINTS Expansin/Lol pI family signature 10 26 IPR007118 GO:0005576
Mupr1562g00010 106 PANTHER EXPANSIN-A15 1 105 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1562g00010 Mupr-Chr1562 78935 79297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1562g00010 1 106 Expansin Gene Family AT5G39270 52.500 3.28e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1562g00010 - - gmx:100799337 175.252