Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1554g00003 ATTTTGAACAGTGGAGTAATTTCTGTCCTAACAACATCACATGCACCCGCGATCCCTACGATCCCTTCCCGTCCCTGCATCCTCGCAGCACCTTCTAGAACCTTCTTCTTAGATCTCAATTGCCTTTCTTTCATGGAAATGGCCTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACAGCGCCAGAAGAACCGCCATCGTTCGTGCTCTCTCTCAAGATGTGGACGAATTCTACGGACTCTGCGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAAACATGGGAGGTGACTTTGCCTGCGGAGGAAGTTCCGCCAGAGCTTCCGGAGCCGGCACTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGATTGGCTCTCCCTGGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGACTGAATCGCAATGAAAGGAAACGTTTATTTAGCATGATCAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCTGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAGGCAACCCAAACCCAAAGTTCGTGGATGAAGGTTATGAGGAGGATGAGGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGGGGAAATTACAATGCAGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAGTGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAGCTTGAGGCGGGGCAGGCCATAA 858 0.4848 ILNSGVISVLTTSHAPAIPTIPSRPCILAAPSRTFFLDLNCLSFMEMASTPRTVEEIFKDYSARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSMINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKGNPNPKFVDEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1554g00003 285 CDD PHD_AL_plant 231 281 IPR044104 -
Mupr1554g00003 285 ProSitePatterns Zinc finger PHD-type signature. 232 278 IPR019786 -
Mupr1554g00003 285 Pfam Alfin 53 178 IPR021998 GO:0006355|GO:0042393
Mupr1554g00003 285 MobiDBLite consensus disorder prediction 181 220 - -
Mupr1554g00003 285 SUPERFAMILY FYVE/PHD zinc finger 220 283 IPR011011 -
Mupr1554g00003 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 279 IPR013083 -
Mupr1554g00003 285 Pfam PHD-finger 232 279 IPR019787 -
Mupr1554g00003 285 MobiDBLite consensus disorder prediction 192 209 - -
Mupr1554g00003 285 FunFam PHD finger alfin-like protein 224 280 - -
Mupr1554g00003 285 ProSiteProfiles Zinc finger PHD-type profile. 229 281 IPR019787 -
Mupr1554g00003 285 PANTHER CPG BINDING PROTEIN 50 284 IPR045104 GO:0006355|GO:0042393
Mupr1554g00003 285 SMART PHD_3 231 279 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1554g00003 Mupr-Chr1554 28126 30845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1554g00003 48 284 Alfin-like Transcription Factor Family AT5G05610 76.050 5.90e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr1554g00003 Alfin 2.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1554g00003 K26274 - gmx:100793126 464.536