Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15538g00003 CAACATAGCACACTTGCACTCACTGTGCTTTCCCATGACACAACTCTATACCTGTCCAGAAGAAGAAAGATCCATGAACTAACATTCCCACGCTCGCTTCGCCTTATTTGCCAGCCTTTTAACCTCACTTCTTGGCTTATTTTCTTCTTTTTTCCTTGTTTGGGATTTGGGGTTTTCTTCGTGAAAAAGGGAAGAACTAATTGCTTAAGTCACTACCTAGGTATAATATATAATATTTTTAAGACACAAAAAAAAAAAAAAACAACTAAGATGGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGCCGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCGGAGAGACAACTTGTTGCAAATGATTCCGAGTCACAGGGAAATTGGACCATTGAGTATACTAGGCTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAACAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCCATTTCTGAGCTTCAGAAGAAGGAGAAAGTAATACAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAAGAGAAAGAAAAGGTTGCAGCGCAGCAGGCACAATGGGAGCATCCAAACCACGGAGTTAATGCATCTTTCTTGCTACCACAGCCACTTCTGAACATGGGTGGCAATTACCGTGAGGAAGCACCAGAAGTAGGGAGGAATGAACTTGACCTTACTCTGGAACCATTATATTCCTGCCACCTTGGATGCTTTTGA 981 0.4302 QHSTLALTVLSHDTTLYLSRRRKIHELTFPRSLRLICQPFNLTSWLIFFFFPCLGFGVFFVKKGRTNCLSHYLGIIYNIFKTQKKKKTTKMGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASFLLPQPLLNMGGNYREEAPEVGRNELDLTLEPLYSCHLGCF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15538g00003 326 ProSitePatterns MADS-box domain signature. 93 147 IPR002100 GO:0003677|GO:0046983
Mupr15538g00003 326 PRINTS MADS domain signature 113 128 IPR002100 GO:0003677|GO:0046983
Mupr15538g00003 326 PRINTS MADS domain signature 128 149 IPR002100 GO:0003677|GO:0046983
Mupr15538g00003 326 PRINTS MADS domain signature 93 113 IPR002100 GO:0003677|GO:0046983
Mupr15538g00003 326 PANTHER SERUM RESPONSE FACTOR HOMOLOG 93 256 - -
Mupr15538g00003 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 100 147 IPR002100 GO:0003677|GO:0046983
Mupr15538g00003 326 ProSiteProfiles K-box domain profile. 178 268 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr15538g00003 326 Pfam K-box region 174 262 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr15538g00003 326 Gene3D - 103 176 IPR036879 GO:0003677|GO:0046983
Mupr15538g00003 326 Coils Coil 212 235 - -
Mupr15538g00003 326 SUPERFAMILY SRF-like 92 182 IPR036879 GO:0003677|GO:0046983
Mupr15538g00003 326 Coils Coil 241 271 - -
Mupr15538g00003 326 SMART madsneu2 91 150 IPR002100 GO:0003677|GO:0046983
Mupr15538g00003 326 FunFam Floral homeotic protein APETALA 1 103 158 - -
Mupr15538g00003 326 CDD MADS_MEF2_like 92 169 IPR033896 GO:0000977|GO:0045944
Mupr15538g00003 326 ProSiteProfiles MADS-box domain profile. 91 151 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15538g00003 Mupr-Chr15538 12234 19068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15538g00003 91 326 MADS-box Gene Family AT1G26310 64.567 2.78e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr15538g00003 K-box 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15538g00003 K09264 - gmx:100810129 450.669