Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15530g00001 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTCAGTAACAACAACTCTGGTGCCCAAATGCGCAGTAGTGATAGAAGAGTACCTGTCACTAGCAATAGCCTCGCTCAGGATCATCACTACAGCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATTGCACACCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCGTTCAATGCATCATCGGGAAGGACAGGAAGTGGTTCAATAGGTGAAGATCCGGCTCTTGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTACGAGCAAGAGCTCACAAAACCCTTTAAAGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCTTCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGATTCTCAAGCTGAAGACCGGGAACTCAAAGTCCAGCTTTTGCGCAAGTATAGTGGATATCTAGGGAGCCTCAAGAAAGAGTTTTTGAAGAAGAAAAAGAACGGAAAGTTGCCAAAAGAAGCTCGGCAACAACTACTTGATTGGTGGAACAGGCATTACAAGTGGCCTTACCCTTCGGAATCTCAAAAGCAGGCACTTGCAGAATCCACAGGCCTAGATCTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCCGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCCATGGATGGCATGCCTATGCTTCTTTAA 960 0.4479 MIGFGGNSCSELSEMDMMNMETNRKFLSLPLSNNNSGAQMRSSDRRVPVTSNSLAQDHHYSHHNPTDTCSVRDKIIAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESFNASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15530g00001 319 SMART HOX_1 225 290 IPR001356 GO:0003677
Mupr15530g00001 319 Pfam KNOX1 domain 71 112 IPR005540 GO:0003677|GO:0005634
Mupr15530g00001 319 SUPERFAMILY Homeodomain-like 225 297 IPR009057 -
Mupr15530g00001 319 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Mupr15530g00001 319 CDD homeodomain 235 287 IPR001356 GO:0003677
Mupr15530g00001 319 Pfam ELK domain 203 224 IPR005539 GO:0003677
Mupr15530g00001 319 Pfam KNOX2 domain 125 171 IPR005541 GO:0003677|GO:0005634
Mupr15530g00001 319 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Mupr15530g00001 319 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Mupr15530g00001 319 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Mupr15530g00001 319 Gene3D - 221 294 - -
Mupr15530g00001 319 SMART KNOX1_2 69 113 IPR005540 GO:0003677|GO:0005634
Mupr15530g00001 319 SMART ELK_2 203 224 IPR005539 GO:0003677
Mupr15530g00001 319 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Mupr15530g00001 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 120 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15530g00001 Mupr-Chr15530 1919 5508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15530g00001 71 313 Homeobox Transcription Factor Family AT1G62360 68.482 6.71e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr15530g00001 KNOX2 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15530g00001 - - gmx:100791704 595.504