Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1552g00002 ATGGACCAAAATGGACAAAGGCGATCAGCAAGATTGGCTGGTTCTCGTTCTCATGCCCAAGCCTATGTGACAAACCATCGTGAACACAACACCATTTCTCAAGCCCATATCATAAGGCAGAACCGACTCACTCGGCCCAACCTACCACACTCCACAAATTCTCAAGCCCATGTCGAAGCCCATCAAGAACGCACTGAGCCCATGCTATCACCCCTCGCCAATCCTCGAGGTCCATCAACCTTTTCAACCTTCCCAGTAGGCCCACTCCAGCAACACCCGAATGTTCCCCAAACCATTCGTCAGACCGAGCCCAATCCCCAGCCCGAGGTTGAGCCCGAGCCTGAGTTGCAACGTGAGCTCTTCAACTTTTGGGCCCGACAGAACCAGGAGGTGGAGAACACCACCAATTTCAGGACCCACTCCCTTCCTCTATCCCGAATCAAGAGGATCATGAAAAGGGACAAGGATGTGGGCATGATATCAGCTGATGCATGTGTTGTCTTTTCCAAGGCATGTGAGATCTTCATCAAGGAACTCACAACAAGGTCTTGGGTCCATGCTGAGGAGAATAGGAGGAGGACACTCCAAAGGGGTGACATTGCAACCACAATTGCCCAGACTCAGGTGTTTGATTTTCTGGTGGATTCTGTTCCTCTGGATAACACAATGGAACATAACATACACTCAGGCCTTCATAGAGGTGGTGGAAGTTCTGGGAGTGTTAGGATTGCTCCTAATTGTGATGCTATGCCACCACCACCCAGGAATGTCAGGGATGAAACTTCTGGATATCCTAGGTTGATTACGAGAATGGGTCCTACCCCTCAAGATCCTGTTGGGAATGAGAACCTTGTAACTGGTCCTGTGGCAGATCAAGTGTGGCCACAACAACAGAATGATGATACCCCTCCAAGTTTCGATGAAAATTGA 930 0.4968 MDQNGQRRSARLAGSRSHAQAYVTNHREHNTISQAHIIRQNRLTRPNLPHSTNSQAHVEAHQERTEPMLSPLANPRGPSTFSTFPVGPLQQHPNVPQTIRQTEPNPQPEVEPEPELQRELFNFWARQNQEVENTTNFRTHSLPLSRIKRIMKRDKDVGMISADACVVFSKACEIFIKELTTRSWVHAEENRRRTLQRGDIATTIAQTQVFDFLVDSVPLDNTMEHNIHSGLHRGGGSSGSVRIAPNCDAMPPPPRNVRDETSGYPRLITRMGPTPQDPVGNENLVTGPVADQVWPQQQNDDTPPSFDEN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1552g00002 309 Pfam Core histone H2A/H2B/H3/H4 124 203 IPR007125 GO:0003677
Mupr1552g00002 309 MobiDBLite consensus disorder prediction 269 309 - -
Mupr1552g00002 309 FunFam Nuclear transcription factor Y subunit gamma 109 219 - -
Mupr1552g00002 309 SUPERFAMILY Histone-fold 101 213 IPR009072 GO:0046982
Mupr1552g00002 309 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 111 233 - -
Mupr1552g00002 309 Gene3D Histone, subunit A 109 218 IPR009072 GO:0046982
Mupr1552g00002 309 MobiDBLite consensus disorder prediction 45 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1552g00002 Mupr-Chr1552 9463 10982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1552g00002 123 234 CCAAT-HAP5 Transcription Factor Family AT1G56170 59.821 8.68e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mupr1552g00002 CBFD_NFYB_HMF 4.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1552g00002 K08066 - aprc:113855583 227.639