LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr1550g00001	ATGAGTAGCACGACAATTCCCACTTTGGAATGGAAGTACGATGTTTTCCTCAGCTTTCGGGGTGAGGATACCCGCACGGGTTTCACCGGTAACCTTTACAACGCTCTACACCAAAAAGGAATCAACACCTTCATCGACGATCAAGAGCTTCGAAAAGGAGAACAAATCACGCCTGCTCTAATGCACGCAATTCAAAATTCTAGGATTGCAATTGTGGTTTTTTCATCAAACTATGCATCATCTACATTTTGTTTGGAAGAGCTTGCGAATATCATGGAGGGCATAGATCACAAGGGTAGGTTGGTTTGGCCCGTTTTTTATCAAGTGGATCCATCCCATGTGCGCCATCAACAAGGGAGTTATGCACAAGCACTGGCCATGCATGAAACAAAAATCACTGACATGGAGAGGATCAAAAGGTGGAGGTTTGCTTTGCAGGAAGCTGCTAATCTCTCTGGTTGGCATTTCAAACATGGGTATGAATATGAGTTTATTAGGAAGATTATTCAAGAGGTTTCTAAAGAGATTGATCGTAGCCCTTTATATGTTGCTAAATACCCAGTTGGGTTAGAGTCTCGTGTGCAGAAAATAGCCTCACTTCTTGATGTTGGATTAAATGATCAAGTTCACATGGTAGGGATTTATGGCATGGGAGGAATAGGTAAAACTACACTTGCATGTGCAGTATACAATTTCATTGCTGATAAATTTGATAGCCTCTGTTTTGTGGCTGATATTAGAGAAAATTCAGTGAAGCATGGGTTGGTACAGCTTCAGGAGACACTTCTTTCTGATTTAGTAGGGGAGAAGGATGCTAAGTTGTGGAATATAAACAAAGGAATTCCAATAATAAAAAATAGGCTCTGTCAAAAGAAAATTCTGTTGGTTCTCGACGATGTTGACAAATTGGAGCAACTAGAAGCACTTGCTGGTGGACTTGATTGGTTTGGCTCTGGCAGCAGAATTATTATAACAACAAGGGATAAGCATTTGCTACACGTTTATGGTGTTGAAAAAATTTACGAAGTAGAAGGGTTAAATCATAAAGAAGCCATGGAATTGTTTAGTTGGTGTGCATTCAAAAGCAAAGAAGTTAATCCCAATTATATGGACATTTTGAAGAGAGCAACACTTTACTCTAATGGTCTCCCATTGTCTCTTGAAATAATAAGTTCTGACTTATTTGGTAAAACAGTGTCAGAATGGAATTCTGCATTAGATACTTATGAAAGAATTCCTCATCAAAATGTTCAGGGAATCCTAAGAGTAAGCTATGATGGCTTAAAGGAATTTGAGAAGGAAATTTTTCTAGACATAGCTTGTTTCTTTAAAGGATACAAACTAAGTGATGTCATAAGCATTTTACATAGTGGTCGTGGCTCCCCCATAGACTATGTTATCCAAGTGTTGGTTGATAAGTGTCTCATAAAAATTGTTCACTGTCATGTGAGAATGCATGACCTGATTGAGGATATGGGTAAGGAAATTGTGCGGCAAGAATCACCCTTAAAGCCAGGTGAACGCAGTAGATTGTGGTTCTCTAAAGATATTCTTCATGTTTTCAAAGAGAACAAGGGGTCTGATAAAACTGAAATCATCATGCTACATCTGCTCAAAGATAAAGAAGTGCAATGGGATGGAAATGCGTTAAAGAAGATGGAGAACCTTAAAATACTGGTTGTAGAAAATGCTCACTTTTCCAGAGGACCTAGTCATCTCCCAAAAACTTTGAGAGTGTTAAAATGGTGGGGATATCCTGAACCATTGCTTCCAGTTCATTGTGATCCGAAGAAATTTGTCATACTTGACTTGTCTATGAGTTTCTTTTCATTTGACAATCAATTGATCATGAAATTTAAGTCCTTGTCTGAAATGAAGTTAAGCGGTTGCAAATTATTAAAACAAGTACCTGACTTGTCTGGAGCACCGAATTTAAAGAAGCTGCATCTTGATGGTTGCAAGAATTTAGTTGAAGTTCATGATTCCATTGGATTCCTCCACAAACTAGAAGTGTTGAATCTTGATTATTGCACGAGTCTCAGGGTTCTTCCTCGTGGCATCAACTTAACTTCTCTTGAAACCCTGTCCCTCAGGATCTGCACAAGTCTGGAGAGTTTTCCAGAAATTTTAGGGAAGATGGAAAACATAAGGTATGTCTATTTGAGTGAGAGCGGCATAAGAGAATTACCCTTTTCAGTTGGAAACCTTGTAGGACTCACAATGATGACACTGAATGGATGCAAGGGGCTACTTGAACTACCAAGTAGCATTTTCATGTTTCCAAAACTTGAGATCTTGCAAGCTAACAACTGCAAGGGACTTGCACAAATAAAAGAGGACAAAGGTGGTCAAGAGCAAGAAACAGTGTCTTCCAATGTAAGAATTCCGTTTGAAAGAAATGCTAGTTTTGGCCATTGCTGTCTCACAGATGAATTTCTTGCTACCCTTCTTCCTTGCTTGCACCATGTGACACGTTTGTACCTCATACGTAACAGTATCACAATCCTACCCTCATGCATCAGTGCATGTCACTCTTTGACTGAACTCTATTTGGATGGATGCAAGGAGCTTAGAGAAATCAGAGGGCTGCCGCCAAATATAACGCGTCTTTCAGCAGTAAATTGCACGTCATTGACTCCCCAGTCTACCGGAATGTTGCTAACTCAGGCACTGCACAGGAGTGGGGACACATGCTTCTGTTTCCCAGTACCAGGATTGACTATCCAGAATTTGTTCAATCACTTTAGCAGTGGAACATCCCTGTCTTTCTGGTTCCGTGGCCAATTCCCAATGATAACTCTCTGTGTTGTTGGAGCTTTGGATACTTGTGGTTGCTGTGTGCTCGATCTGTTCCTTAATGGCAGTCAAAAGTTCCCCGGTTACTTCAAATTTATGACCATAGATGATTCAATTCAGACAAATCATATTATTCTATTCAACCTACAGCTCCAATTTCACAGCGATGAGTTTGAAACATTGCACACTTTGAATGGATGGAACCATGCTGAGATTTCATTTTCAGAAAATGTAAGAAGGGATGTTGAGTGGATGGGAGTTTATGTAAAGGAACAAAAAACAAGCATGCCGGATATTCGATTTACAGATCCTCACAAAATTCTCACCCCTCCCTCTAATGGATCACCAAAATTAGTTACAAGTTCT	3162	0.3975	MSSTTIPTLEWKYDVFLSFRGEDTRTGFTGNLYNALHQKGINTFIDDQELRKGEQITPALMHAIQNSRIAIVVFSSNYASSTFCLEELANIMEGIDHKGRLVWPVFYQVDPSHVRHQQGSYAQALAMHETKITDMERIKRWRFALQEAANLSGWHFKHGYEYEFIRKIIQEVSKEIDRSPLYVAKYPVGLESRVQKIASLLDVGLNDQVHMVGIYGMGGIGKTTLACAVYNFIADKFDSLCFVADIRENSVKHGLVQLQETLLSDLVGEKDAKLWNINKGIPIIKNRLCQKKILLVLDDVDKLEQLEALAGGLDWFGSGSRIIITTRDKHLLHVYGVEKIYEVEGLNHKEAMELFSWCAFKSKEVNPNYMDILKRATLYSNGLPLSLEIISSDLFGKTVSEWNSALDTYERIPHQNVQGILRVSYDGLKEFEKEIFLDIACFFKGYKLSDVISILHSGRGSPIDYVIQVLVDKCLIKIVHCHVRMHDLIEDMGKEIVRQESPLKPGERSRLWFSKDILHVFKENKGSDKTEIIMLHLLKDKEVQWDGNALKKMENLKILVVENAHFSRGPSHLPKTLRVLKWWGYPEPLLPVHCDPKKFVILDLSMSFFSFDNQLIMKFKSLSEMKLSGCKLLKQVPDLSGAPNLKKLHLDGCKNLVEVHDSIGFLHKLEVLNLDYCTSLRVLPRGINLTSLETLSLRICTSLESFPEILGKMENIRYVYLSESGIRELPFSVGNLVGLTMMTLNGCKGLLELPSSIFMFPKLEILQANNCKGLAQIKEDKGGQEQETVSSNVRIPFERNASFGHCCLTDEFLATLLPCLHHVTRLYLIRNSITILPSCISACHSLTELYLDGCKELREIRGLPPNITRLSAVNCTSLTPQSTGMLLTQALHRSGDTCFCFPVPGLTIQNLFNHFSSGTSLSFWFRGQFPMITLCVVGALDTCGCCVLDLFLNGSQKFPGYFKFMTIDDSIQTNHIILFNLQLQFHSDEFETLHTLNGWNHAEISFSENVRRDVEWMGVYVKEQKTSMPDIRFTDPHKILTPPSNGSPKLVTSS	1054

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr1550g00001	1054	PRINTS	Disease resistance protein signature	687	703	-	-
	Mupr1550g00001	1054	PRINTS	Disease resistance protein signature	211	226	-	-
	Mupr1550g00001	1054	PRINTS	Disease resistance protein signature	287	301	-	-
	Mupr1550g00001	1054	PRINTS	Disease resistance protein signature	380	394	-	-
	Mupr1550g00001	1054	Pfam	TIR domain	12	175	IPR000157	GO:0007165
	Mupr1550g00001	1054	Gene3D	Ribonuclease Inhibitor	522	786	IPR032675	-
	Mupr1550g00001	1054	Pfam	NB-ARC domain	191	424	IPR002182	GO:0043531
	Mupr1550g00001	1054	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	154	IPR035897	-
	Mupr1550g00001	1054	Gene3D	-	345	429	IPR042197	-
	Mupr1550g00001	1054	Gene3D	-	176	339	IPR027417	-
	Mupr1550g00001	1054	ProSiteProfiles	TIR domain profile.	11	176	IPR000157	GO:0007165
	Mupr1550g00001	1054	Gene3D	-	10	175	IPR035897	-
	Mupr1550g00001	1054	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	439	IPR027417	-
	Mupr1550g00001	1054	SUPERFAMILY	L domain-like	530	889	-	-
	Mupr1550g00001	1054	SMART	till_3	12	151	IPR000157	GO:0007165
	Mupr1550g00001	1054	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	178	-	-
	Mupr1550g00001	1054	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	709	IPR044974	GO:0006952
	Mupr1550g00001	1054	Gene3D	Ribonuclease Inhibitor	798	893	IPR032675	-
	Mupr1550g00001	1054	SUPERFAMILY	"Winged helix" DNA-binding domain	416	521	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr1550g00001	Mupr-Chr1550	923	5812	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr1550g00001	13	779	WRKY Transcription Factor Family	AT4G12020	30.856	2.32e-87	307

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr1550g00001	-		-	gmx:100814790	1332.39