Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15500g00002 ATGCCTTCTCTATCTCTCTCTGACACTGGTATCACCCCCAACGACAATAAGAACCACAGCGCTAAGAAAACCGAGAAACATTCGCCAACCGAACCCATTATTGCAAACAAAACATCCAAACTCGTGTCCAATCTCAACGCCCCCGATCCCGACCGCGATGGGGTTTCGGGGAAGAAGAAGAAGAAGCGTAAGGCTTCAGATATAGAGGCCATGGAGACAAGCCATGGGGACGACGAGACTAGTTCCGAGCTTGTCGAACCCGAAGCTTCTAGAGAAGAGGATAATAGTCACAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCGGAGGAGCCTTTGTTAATGGAAGCAGAAGAAAAAGAAGAACAAGAAAAGAAGGAGGATCCCAATGCGGTTTCCAATTTCAGGATTTCGGAGCCCTTGAAGGCCAAGCTCAAGGAGAAGGGCATTGAATCGCTCTTTCCCATTCAGGCCATGACTTTCGACACCGTTCTTGATGGTTCTGATTTGGTGGGTCGGGCTCGCACCGGTCAGTTTATTGGGGTGCCAAGAAAAAAAGGACTTTTGTTCGTAACTGTGAAGGGTCTTGGTAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTATAACAAATGGTCCAGCGAAATCGTCAAGAAAGACTGGCTATGGGAGGACTCCGAGCGTTCTTGTGCTTCTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGCGTGATGGGATTGACCTCTTGTTGTTTATACGGTGGAGCTCCGTATCAGGGTCAAGAAATTAAGCTTAGGAGAGGCATTGATATTGTTATCGGCACGCCGGGTCGCGTGAAGGATCATATAGAGAGGGGAAACATTGATCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGGTAAGGTAGAAAATCTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCAGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTTAGGCATATTATTCTTCCATGTACTAGTTCTGCCAGGTCCCAACTTATCCCAGACATTATTCGCTGTTACAGCAGTGGAGGCCGGACAATTATATTCACCGAGACAAAGGAGTCCGCCTCTCAGCTTGCAGGGACGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAAGCACAGCGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTTATGACATTAGTTGCCACAAATGTGGCAGCCCGAGGTCTTGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGTGATGTAGAAGCCTATATCCATCGGTCTGGGCGCACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTATGCTTTATGATCCGAAAAGATCAAATATATCTAAAATAGAAAGAGAATCTGGTGTAAAATTTGAACACGTATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGGGGTGAAGCTGCTGAAATGATTATCCAAGTATCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAGTTCTGGTTTATCAGTCGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTCGGTTATACTGAAATAAAGAAAAGATCACTTCTCACTTCCATGGAGAATTATGTTACATTACTTCTTGAGATTGGGAGACCAATCTTCACCCCATCTTTTGCCTATGGTGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACACTCACTGCTGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGAGACATATCTCACTGGTCAGGGAAATGCCTCGAATGTAAGTTTAGAGGTGTTGAAAGCATTGCCACGTTTACAACAAAGAGATCAATCAAGAGGTGGCAGATTTGGTGATGGTGGTGGTCGAGGTGGGAACAGGTTTTCAGGTGGAAGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGCAGGAATAGTAGATTTTCAAGTGATAGGTTTTCCAGTGGTGGAAGAGGAGGTCGTGGCAACTGGGGCGGAAAGAGATGGTGA 2214 0.4521 MPSLSLSDTGITPNDNKNHSAKKTEKHSPTEPIIANKTSKLVSNLNAPDPDRDGVSGKKKKKRKASDIEAMETSHGDDETSSELVEPEASREEDNSHKKKKKKKKAKSEEPLLMEAEEKEEQEKKEDPNAVSNFRISEPLKAKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQFIGVPRKKGLLFVTVKGLGKTLAFVLPILESITNGPAKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGVMGLTSCCLYGGAPYQGQEIKLRRGIDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENLSKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIILPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGTLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMIIQVSDSVIPAFKSAAEDLLNSSGLSVVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAYGVLRRFLPEEKVEAVKGLTLTADGNGVVFDVPAEDLETYLTGQGNASNVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGNRFSGGRGGGGGGGGGGRNSRFSSDRFSSGGRGGRGNWGGKRW 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15500g00002 737 CDD DEADc 140 355 - -
Mupr15500g00002 737 Gene3D - 75 360 IPR027417 -
Mupr15500g00002 737 Pfam GUCT (NUC152) domain 581 676 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mupr15500g00002 737 SUPERFAMILY RNA-binding domain, RBD 585 668 IPR035979 GO:0003676
Mupr15500g00002 737 MobiDBLite consensus disorder prediction 1 17 - -
Mupr15500g00002 737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 360 IPR014001 -
Mupr15500g00002 737 CDD SF2_C_DEAD 375 501 - -
Mupr15500g00002 737 CDD GUCT_RH7_like 588 673 - -
Mupr15500g00002 737 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 81 528 - -
Mupr15500g00002 737 MobiDBLite consensus disorder prediction 677 737 - -
Mupr15500g00002 737 SMART helicmild6 415 492 IPR001650 -
Mupr15500g00002 737 MobiDBLite consensus disorder prediction 107 129 - -
Mupr15500g00002 737 SMART ultradead3 148 378 IPR014001 -
Mupr15500g00002 737 Pfam Helicase conserved C-terminal domain 394 492 IPR001650 -
Mupr15500g00002 737 FunFam DEAD-box ATP-dependent RNA helicase 7 598 670 - -
Mupr15500g00002 737 MobiDBLite consensus disorder prediction 1 129 - -
Mupr15500g00002 737 MobiDBLite consensus disorder prediction 31 45 - -
Mupr15500g00002 737 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Mupr15500g00002 737 MobiDBLite consensus disorder prediction 52 96 - -
Mupr15500g00002 737 Pfam DEAD/DEAH box helicase 154 348 IPR011545 GO:0003676|GO:0005524
Mupr15500g00002 737 Gene3D - 599 670 - -
Mupr15500g00002 737 Gene3D - 372 598 IPR027417 -
Mupr15500g00002 737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 531 IPR001650 -
Mupr15500g00002 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 504 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15500g00002 Mupr-Chr15500 5492 9848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15500g00002 181 528 Eukaryotic Initiation Factors Gene Family AT1G72730 29.577 2.97e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15500g00002 K16911 - gmx:100820207 1014.99