Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1546g00003 CACCAATTTAATGAACAAATCCTTGTAGAAATTATTTTGGGATCTTGGTTGAAATTATTTTCTATCACAAATCCTTGTTTTGTAATTCTTTATGGTTGGCATTGCCATTCATACATTCTCACAGATGAGCAGTTTCAGTGCAGATATCTGGAGGCTTTTTTAGCATATGCTGGTGCGAATATATGTTTAGCCGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCTGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCTCACTATATATTGGCTCCAAGCACCCTTTTTGTGAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGTGCATGTATAGCTTCTTTATTGGGGCAGGGAGGATCTAACAAGTATCACTTGACTTGCGCTTGGCTTAGATATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCGGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTACTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTACTCTTCTTTGGAGGACATTTTTCACAACAGCAGTAGTTGCTATTTTTTGTGCCACAGGAAAATGTGGGCTATTTGGGGAAGGTGGTCTGATAATGTATGATGTTAGTTCAGCCAATATAACATACAGTGCTACTGATATATTAGCAGTACTACTTTTGGGAGCCGTTGCTGGAATTCTTGGAAGCATATATAATTACCTCGTGGATAAGGTTGTTCGGACATATAGCATCATCAATGGAAAAGGTGCAGCTTTCAAAATCTCTCTTGTTGTCACAATTGCTTTTTTGACATCATGTTGTTATTATTTCTTGCCATGGATTGCACATTGTGTTCCCTGTCCTTCTGATTCAACAGTGAGCTGTCCCTCTATTGATGAGTCTGGAGAATACCAAAACTTTCAATGCCCAGCAGGCTACTACAATGATCTTGCTTCCCTCTTTCTAAACACCAATGATGATGCTATTCGTAATCTATTCAGCCCCAGGATAATCAAAGAGTTTCATATTAGCAGTTTGTTTATCTACTTTGCTACTATTTATTGCCTTGGGATAATCACTTATGGTATTGCTATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCCGGTGCAGCCTATGGCCGGCTTTTTGGCCGGCTCTTTGAACCAATCACCAAACTTGACAGAGGGCTCTTTGCCCTACTTGGAGCTGCTTCCTTCCTCGGTGGCACCATGAGAATGACAGTGTCTGTCTGTGTCATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAGTCTCAAAAACTGTGGCTGACGGCTTCAACAAGGGTGTCTATGATCAAATACTTAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGTGGAATTTAGTTACAAGCGATGTTGTTTCAGGTCCATTGATAACCTTTTCTGGCATTGAAAAGGTTGGGAATATATTGCATACTTTGAATACTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTCTCAGATGCACCAGAATTATGTGGCCTTGTACTGAGGTCTCATTTACTAGTGTTACTGAAGGAGAAGATTTTTTCAAAAGATAGGGGTTTTGCAGATCAAAGTATCTTCCAAATAATTTCTACTTTAGATTTTGGAAAGGCAGGATCAGGAAAGGGGATCAAACTAGAGGATCTTGATATCGAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATTCATCCCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACATGGACTCAGACACATGTGTGTTGTTCCAAAGAACCAAGGGAGACCTCCAGTTGTTGGAATTCTAACTCGCCATGATTTTATGCCGGAGCATGTTTTGGGACTCTACCCTGATATCAAGCCTCACAAAGGGCAA 2055 0.4209 HQFNEQILVEIILGSWLKLFSITNPCFVILYGWHCHSYILTDEQFQCRYLEAFLAYAGANICLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSNKYHLTCAWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSTLLWRTFFTTAVVAIFCATGKCGLFGEGGLIMYDVSSANITYSATDILAVLLLGAVAGILGSIYNYLVDKVVRTYSIINGKGAAFKISLVVTIAFLTSCCYYFLPWIAHCVPCPSDSTVSCPSIDESGEYQNFQCPAGYYNDLASLFLNTNDDAIRNLFSPRIIKEFHISSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGAAYGRLFGRLFEPITKLDRGLFALLGAASFLGGTMRMTVSVCVILLELTNDLLLLPLVMLVLLVSKTVADGFNKGVYDQILKIKGLPYLEAHAEPYMWNLVTSDVVSGPLITFSGIEKVGNILHTLNTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKEKIFSKDRGFADQSIFQIISTLDFGKAGSGKGIKLEDLDIEEEEMDMYVDLHPITNSSPYTVVETMSLAKAAILFRQHGLRHMCVVPKNQGRPPVVGILTRHDFMPEHVLGLYPDIKPHKGQ 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1546g00003 685 PRINTS Chloride channel signature 389 409 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 PRINTS Chloride channel signature 107 126 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 PRINTS Chloride channel signature 171 190 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 PRINTS Chloride channel signature 76 93 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 PRINTS Chloride channel signature 421 437 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 PRINTS Chloride channel signature 477 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 PRINTS Chloride channel signature 439 458 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 Gene3D Clc chloride channel 3 490 - -
Mupr1546g00003 685 PRINTS Plant CLC chloride channel signature 341 357 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mupr1546g00003 685 PRINTS Plant CLC chloride channel signature 192 200 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mupr1546g00003 685 PRINTS Plant CLC chloride channel signature 206 216 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mupr1546g00003 685 ProSiteProfiles CBS domain profile. 617 679 IPR000644 -
Mupr1546g00003 685 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 39 673 - -
Mupr1546g00003 685 SUPERFAMILY CBS-domain pair 494 668 IPR046342 -
Mupr1546g00003 685 Gene3D - 491 669 IPR046342 -
Mupr1546g00003 685 Pfam Voltage gated chloride channel 64 471 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mupr1546g00003 685 SUPERFAMILY Clc chloride channel 27 493 IPR014743 -
Mupr1546g00003 685 CDD CBS_pair_voltage-gated_CLC_euk_bac 505 670 - -
Mupr1546g00003 685 Pfam CBS domain 619 667 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1546g00003 Mupr-Chr1546 37690 43468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1546g00003 48 683 Ion Channels AT5G49890 72.981 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1546g00003 K05016 - gmx:100809070 1082.01