Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15379g00001 ATGGCTTCCAAGCTCTGCGACTCTTGCAAATCCGCAACCGCAACTCTCTATTGCCGCCCTGACGCTGCTTTCCTCTGCGGCGCGTGCGACTCCAAGGTCCACGCCGCCAACAAGCTCGCCTCGCGCCACCCGCGCGTGTCGCTCTGCGAGGTCTGCGAGCAGGCCCCCGCGCACGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGTCTCGCCTGCGACCGCGACATCCACTCCGCTAATCCCCTTGCCAGCCGCCACGAGCGCCTCCCGGTCACTCCCTTCTTCGAGTCCGTACACTCCGTCAAGGCCTCCTCTCCGATCAACTTCCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGACGTCAGCACCGAGGAGGCCGAGGCTGCTTCCTGGCTGCTCCCTACTCCAAAGACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAACCGGTTCCTTACATAGATCTGGATTATGCCGCCGTGGATCCGAAGGCGGAGCAGAAAAGCTCGGCCACCGCCGACGGCGTAGTTCCGGTGCAGAGCAACTTCGAGCCGTTCGCCTACGGTTACAAGTACAACTGCACTCTGTCACAGTCACAGTCTCAGATGAGCCATAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGGAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCGGCGGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCGAGAGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCTTCGAGAAAAGCGTATGCGGAAACGAGGCCAAGGATCAAAGGCAGATTCGCCAAACGCACTGATATCGACCCTCTGGCTGGTTACGGCGTCGTTCCGTCCTTTTGCTTAGCGGAAGGAGGCGAAGGGAACATCGATGGCAATAGCACTTCCTTTTCGGCTATGGCTGCTATGCACACATTTGCGAATCAAAATCTGGAATGCTATTGGCACTGA 1038 0.5877 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVTPFFESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPTPKTDLNSSQYLFSESEPVPYIDLDYAAVDPKAEQKSSATADGVVPVQSNFEPFAYGYKYNCTLSQSQSQMSHSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIDPLAGYGVVPSFCLAEGGEGNIDGNSTSFSAMAAMHTFANQNLECYWH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15379g00001 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 314 IPR045281 GO:0009909
Mupr15379g00001 345 Pfam CCT motif 252 294 IPR010402 GO:0005515
Mupr15379g00001 345 CDD Bbox1_BBX-like 5 48 - -
Mupr15379g00001 345 ProSiteProfiles CCT domain profile. 252 294 IPR010402 GO:0005515
Mupr15379g00001 345 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Mupr15379g00001 345 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Mupr15379g00001 345 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Mupr15379g00001 345 SMART bboxneu5 49 91 IPR000315 GO:0008270
Mupr15379g00001 345 SMART bboxneu5 1 48 IPR000315 GO:0008270
Mupr15379g00001 345 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15379g00001 Mupr-Chr15379 3735 5100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15379g00001 1 309 C2C2-CO-like Transcription Factor Family AT5G24930 53.581 4.20e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mupr15379g00001 zf-B_box 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15379g00001 - - gmx:100794431 565.074