Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1536g00003 ATGGCTTTCTTTAGGAACTTTTCAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGAATGTACAGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGCGAACCAGATGGTTCCAGTAGACTGCAAACTGAGGCAACAGCTGATGATGCAGATGCTATGAAAGAATCGAACTTGCAGACTACTGGTAGTAAAACAGCTATGATGGGAAGGTGGGGTTCTACATTTTGGAAGGACTGCGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGTGGGAAGATTAGACTCAGATGATGATGATGGACAGAAGGAGGCAGGAAAAGGTCCAAGAGGTCATTCTGACGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAGCAGAGCGACTCATTGCATTATGGGAGGAACAATAAGCCCACTGGATCAAATTCATGGCCTCAACGGATGTCGACTCCTGTGAATAGAACATTGCATCAGAATTCGAGGTTTTCAGATGATGCTGAAGATAATGATGGTGAAGATGACGACGATGACGATAATGATAATGATGGCGATGATGCTGATTATGAAGAAGAGGACGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCAGCCACAAGTGGTCATGCTGGAAACAAGGTCGATAAAGATTGGGAAGGTGAAGGCTCTGATGAAGATGGTGATAGTGATGAAAATATAGCTGTCTCAGATGATGATGATGAATCATTCTATGCTAAAAAACCTAAAGGTAGGCAACGGGGTAAGGTAGGACAAAACATAAAATCTACCAGAGATCACAAAATGTATGCTGCATCTAGTCGACAAAGAAGAGTCAAATCATCCTTTGAAGACAATGAGTCAACAACAGAGGATTTTGACAGTGACAGTGATGAGGATTTCAAAAGCACAAAAAAGCGCAGTGTTCATGTCCGCAAGAACAATGGTCGCTCTGCTGCAGCCACAGGTTTTTCTACACGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGACGAAGGGAAGAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAGGATGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTATTGAGTCACTTGTTTGATTCGGACTTTGATTGGAATGAGATAGAATTTTTGATTAAATGGAAAGGGCAGTCACATTTGCACTGCCAGTGGAAGTCTTTTGCGGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATTGAGGACATCAGGTACAGGAAGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGAATAATTGCGGATAAGATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATCGATATTGCTTTTGCTCAACATGCTATCGATGAGTATAAGGCTCGTGAGGCTGCTATGTCAGTCCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGTAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTCCTACAGAATACCCAGCAAATCCATGGTCCTTTCCTTGTAGTTGTTCCGTTGTCCACTTTATCAAACTGGGCCAAAGAATTTAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGCACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTCATAATGATAAAAGACCTGGAAAGCCAATAAAATTCAATGCACTATTGACTACATATGAAGTAGTTCTGAAGGATAAGGCTGTGCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCCCATAGGTTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAGCTATGGAGCAAGGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGCTTGCAAATCTTCATTCGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCTAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGTGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAGAAGTGCTGTAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGATTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTCGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTCTCATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTACGGCAGCAGGCAATGGATCATTTCAACGCACCTGGTAGTGATGATTTTTGTTTCCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCACAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAGGAAGCTAAAAAAGGTGGAAGTTATTTTGACAAAAACGAGTTGTCCTCCATCTTACGTTTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGGAGTGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCGGAGAAGGTTGAAGAGAAGGAAGCTGGTGGGGAAGAAGGAAATGAGTTATTAAGTGCCTTTAAGGCAAGATATGTGGACAGTATTGTTGCCAACTTTTGCAATGATGAAGATGATGGAAGTTTTTGGAGCCGTTGGATAAAGCCTGATGCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGATCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCGGAAAGAAGTAATAAAAGAAAAAAGAAAGAATCTGATCCACCGGAACGAGTTCAGAAACGCCGGAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGATTGAGGGAGCATCTGTCCAAGTTATGAAATATGGTAATGAGAGCCAAATTGACTTAATTGTTGCTGAAGTTGGTGGTTTTGTTGAGGCAGCTCCACCTGGAGCGCAGATTGAACTTTTCAATTCTCTAATTGATGGCTGTACAGAAGCAGTGGAACTTGGAAATCTAGATGTAAAGGGTCCTTTGCTGGATTTTTTTGGTGTTCCAGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTGCAACTTCTGGCAAAGCGCATTGGTCGATATGAAGATCCTATTGCACAATTCCGTGTTCTGTCTTATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTAGATGAAAGGCTTGGCCTTATGAAAAAAATTGCACCTGTAGAACTTCAACATCATGAAACTTTCTTGCCACGGGCTCCAAATTTGAAAGACCGTGCTAATGCTCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAGAGAAAATATGAACATCTCACTGTTACGTGGGCAGGAGAAAAAGAAAAAATTGGGTTCTGTTAATGACCAAGTGAGAAAGGATAGATTTCAGAAGCCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGTTTGAAGAAATGAAAACTTTAAAACGTCTTCACAGGTTGCAGACAACTAGTGCCAATCTTCCAAAGGAAAAGGTTCTTTCGAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACTCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTGTCTACTTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAGCAGGAGCAAGGGGAGGCAGGGGTTGGCCCCTCTCACGTCAATGGGTCGGTATCTGTTTCATTTAACAGAAATGGAAATCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGACTACATATCAAATGCCAGAATCAGTTAATAACACTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCATTTCCAGGGTCAGCCGCCACCTCAAAGAACTGTAAGTAATGGAGTTCGGATTACTGATCCTAACTCACTCGGGATCCTAGGTGCTGGACCATCGGACAAACGCTTTGCTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAGCCAGCTTGGTGGGATTAGAGTGGCTGATTATAAGAGTGTTGGCGGTTGGCTCTCACTCTTCATTTATACAACAGCTTCAGCTATTGTACATTCTGTGGAATTTTTTTCTTCCACCCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTTGTGGCGGATATGAAAGATATACCTACACTGGGATTCACATCCTTGAACAAGATGGCTGAAGCCGAAAAGATCTAA 5424 0.411 MAFFRNFSNDTVSHGVMEDKSQGQNANRVHRSVGNECTDATSSEKEFDMNMEAQYESDGEPDGSSRLQTEATADDADAMKESNLQTTGSKTAMMGRWGSTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRVGRLDSDDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYGRNNKPTGSNSWPQRMSTPVNRTLHQNSRFSDDAEDNDGEDDDDDDNDNDGDDADYEEEDEADEDDPDDADFEPATSGHAGNKVDKDWEGEGSDEDGDSDENIAVSDDDDESFYAKKPKGRQRGKVGQNIKSTRDHKMYAASSRQRRVKSSFEDNESTTEDFDSDSDEDFKSTKKRSVHVRKNNGRSAAATGFSTRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLLSHLFDSDFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIIEDIRYRKTISREEIEVNDVSKEMDLDIIKQNSQVERIIADKISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFHNDKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWSKDEFVQNYKNLSSFNENELANLHSELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSSILRFGAEELFKEERSDEESKKRLLSMDIDEILERAEKVEEKEAGGEEGNELLSAFKARYVDSIVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSNKRKKKESDPPERVQKRRKAEYSAPAVPMIEGASVQVMKYGNESQIDLIVAEVGGFVEAAPPGAQIELFNSLIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSRVGRKPSKKERENMNISLLRGQEKKKKLGSVNDQVRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMFEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEELYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQGEAGVGPSHVNGSVSVSFNRNGNPFRRHMERQRGLKNMTTYQMPESVNNTGKSEAWKRRRRAESDNHFQGQPPPQRTVSNGVRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPSSQLGGIRVADYKSVGGWLSLFIYTTASAIVHSVEFFSSTHGNKILRIPFWCLVADMKDIPTLGFTSLNKMAEAEKI 1807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1536g00003 1807 CDD CD2_tandem 540 596 - -
Mupr1536g00003 1807 SUPERFAMILY Chromo domain-like 521 597 IPR016197 -
Mupr1536g00003 1807 Gene3D - 853 1083 IPR027417 -
Mupr1536g00003 1807 Gene3D - 415 541 - -
Mupr1536g00003 1807 Gene3D - 625 852 IPR038718 -
Mupr1536g00003 1807 SMART DUF4208_2 1505 1610 IPR025260 -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 223 260 - -
Mupr1536g00003 1807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 646 818 IPR014001 -
Mupr1536g00003 1807 FunFam protein CHROMATIN REMODELING 5 isoform X2 544 596 - -
Mupr1536g00003 1807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 843 IPR027417 -
Mupr1536g00003 1807 Gene3D - 1336 1449 - -
Mupr1536g00003 1807 CDD CD1_tandem 427 507 - -
Mupr1536g00003 1807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 942 1093 IPR001650 -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 399 431 - -
Mupr1536g00003 1807 Pfam SNF2-related domain 653 910 IPR000330 GO:0005524|GO:0140658
Mupr1536g00003 1807 FunFam Chromo domain-containing protein 1 417 542 - -
Mupr1536g00003 1807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1128 IPR027417 -
Mupr1536g00003 1807 SMART chromo_7 540 599 IPR000953 -
Mupr1536g00003 1807 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 176 1667 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 126 169 - -
Mupr1536g00003 1807 Gene3D - 544 596 - -
Mupr1536g00003 1807 Pfam Helicase conserved C-terminal domain 939 1052 IPR001650 -
Mupr1536g00003 1807 ProSiteProfiles Chromo and chromo shadow domain profile. 429 508 IPR000953 -
Mupr1536g00003 1807 Pfam Chromo (CHRromatin Organisation MOdifier) domain 543 597 IPR023780 -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 79 94 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1666 1680 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 376 398 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1 431 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1682 1696 - -
Mupr1536g00003 1807 CDD SF2_C_SNF 928 1063 - -
Mupr1536g00003 1807 ProSiteProfiles Chromo and chromo shadow domain profile. 542 606 IPR000953 -
Mupr1536g00003 1807 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 853 1083 - -
Mupr1536g00003 1807 Coils Coil 1082 1102 - -
Mupr1536g00003 1807 Pfam Domain of unknown function (DUF4208) 1517 1609 IPR025260 -
Mupr1536g00003 1807 SMART helicmild6 968 1052 IPR001650 -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 189 216 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1218 1249 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 105 125 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1657 1696 - -
Mupr1536g00003 1807 SMART ultradead3 630 827 IPR014001 -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1220 1248 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 317 345 - -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 280 297 - -
Mupr1536g00003 1807 Coils Coil 1136 1156 - -
Mupr1536g00003 1807 SUPERFAMILY Chromo domain-like 426 509 IPR016197 -
Mupr1536g00003 1807 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1536g00003 Mupr-Chr1536 26391 44908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1536g00003 656 1079 RAD5 or RAD16-like Gene Family AT1G02670 25.692 1.66e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1536g00003 SNF2_N 2e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1536g00003 K11367 - gmx:100792398 3043.45