Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1535g00002 ATGAAGGGTAGCCAAGAATGGAAGGAATTAGAAAGAAACATAACTTCAAAGAACTCTTATGGCGAGATTTTTTTGAGGATGGTAAGAAAACATGGGAAAGAAAAAAATGAGAGTCGAACCTATGAGAAAACGGGTTTTGTTTTCTCTATCCAAATTCCAAATGATGCGGTTATAGTTGTTGAGAGATTTGATGATCAATCTTTCACTTCACCGCTTAAAGGGCTTTTTTCGTGGGGAGGTTGTAATGAGAGTGGTGATAGAAATGGATCATCTGAAGACGATGTTGATCTACAGAACCTCATAGATCCCCAGGCTGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACTTGGGCAGTCTCAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCCTACCCATCCGAATCACAGAAGCTGGCTCTTGCAGAGTCAACAGGTCTAGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCACCCACACTACTACATGGATAATGTTCTGGGCAATCCCTTTCCCATGGATCTTTCACATCCCATGCTCTAG 684 0.424 MKGSQEWKELERNITSKNSYGEIFLRMVRKHGKEKNESRTYEKTGFVFSIQIPNDAVIVVERFDDQSFTSPLKGLFSWGGCNESGDRNGSSEDDVDLQNLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1535g00002 227 Pfam ELK domain 109 130 IPR005539 GO:0003677
Mupr1535g00002 227 SUPERFAMILY Homeodomain-like 131 207 IPR009057 -
Mupr1535g00002 227 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Mupr1535g00002 227 ProSiteProfiles 'Homeobox' domain profile. 129 192 IPR001356 GO:0003677
Mupr1535g00002 227 FunFam Homeobox protein knotted-1-like 2 134 196 - -
Mupr1535g00002 227 Pfam Homeobox KN domain 149 188 IPR008422 GO:0003677|GO:0006355
Mupr1535g00002 227 CDD homeodomain 141 193 IPR001356 GO:0003677
Mupr1535g00002 227 ProSiteProfiles ELK domain profile. 109 129 IPR005539 GO:0003677
Mupr1535g00002 227 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 198 - -
Mupr1535g00002 227 SMART HOX_1 131 196 IPR001356 GO:0003677
Mupr1535g00002 227 Gene3D - 134 196 - -
Mupr1535g00002 227 SMART ELK_2 109 130 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1535g00002 Mupr-Chr1535 7445 11246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1535g00002 86 227 Homeobox Transcription Factor Family AT1G62360 86.897 1.71e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mupr1535g00002 Homeobox_KN 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1535g00002 - - gmx:100805837 306.219