Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15291g00001 TGGAAAAGTAAGACGCACAACGAGGCAGCCTTGAAACGAACGGGTGCGATTGTTTCAAAAAGCGCACAAAACAAACGCGAATTGAATCTGTGCGCCTCACCCACCACACAACGTTGCTTACAACTTACGACCTACAAATACCCCTCTCACTCTCTCACTGAATCCCTCGCTTCCTTCGTTCTCTCTCGCACGACCAACATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGACCAACAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACACTTCACTTGGTGTTGAGGCTCAGGGGAGGAACCATGATTAAAGTGAAGACATTAACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACAATTGACCGGATCAAGGAACGCGTAGAAGAAAAAGAGGGAATTCCACCTGTGCAGCAGAGGTTTTCTCTTTTCTTGTACTAA 573 0.4695 WKSKTHNEAALKRTGAIVSKSAQNKRELNLCASPTTQRCLQLTTYKYPSHSLTESLASFVLSRTTNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRFSLFLY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15291g00001 190 ProSiteProfiles FERM domain profile. 143 190 IPR000299 GO:0005856
Mupr15291g00001 190 CDD Ubl_ubiquitin 67 142 - -
Mupr15291g00001 190 PANTHER UBIQUITIN 145 185 - -
Mupr15291g00001 190 ProSiteProfiles Ubiquitin domain profile. 143 185 IPR000626 GO:0005515
Mupr15291g00001 190 PRINTS Ubiquitin signature 98 118 IPR019956 -
Mupr15291g00001 190 PRINTS Ubiquitin signature 119 140 IPR019956 -
Mupr15291g00001 190 PRINTS Ubiquitin signature 77 97 IPR019956 -
Mupr15291g00001 190 Pfam Ubiquitin family 145 185 IPR000626 GO:0005515
Mupr15291g00001 190 Pfam Ubiquitin family 69 140 IPR000626 GO:0005515
Mupr15291g00001 190 SMART ubq_7 67 138 IPR000626 GO:0005515
Mupr15291g00001 190 SMART ubq_7 143 190 IPR000626 GO:0005515
Mupr15291g00001 190 FunFam Polyubiquitin 3 67 142 - -
Mupr15291g00001 190 ProSitePatterns Ubiquitin domain signature. 93 118 IPR019954 -
Mupr15291g00001 190 Gene3D - 144 188 - -
Mupr15291g00001 190 Gene3D - 61 143 - -
Mupr15291g00001 190 SUPERFAMILY Ubiquitin-like 55 142 IPR029071 -
Mupr15291g00001 190 ProSiteProfiles Ubiquitin domain profile. 67 142 IPR000626 GO:0005515
Mupr15291g00001 190 SUPERFAMILY Ubiquitin-like 144 185 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15291g00001 Mupr-Chr15291 9385 12586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15291g00001 145 185 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 58.537 2.31e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15291g00001 K12158 - psom:113317438 225.713