Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1523g00001 ATGTCCACCGACATATCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGCGCGGTTCTCACAGTCGCTGAGCGCGGCGACGACGACCCCGCCTTCGCCGAGCGATGCGAAATCTTCAGCGACGCGGGCGTGCTCGGGTTCCGGACCCAAACCGGCGTCGTTTTGAGTCCGCTGGATTCGTCGCAATGCGGCGGCGGCGGCTCCAAGACCAAGAGGACGAAGAAAATTGGGATGGTGAACGGGAGCGTGAGCGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTGCACCAAAATCGATGCTCGCGTCGTGTGCGTCGAGGTACCTAGGGTTGTGCTTCTTGTTGACGTTTACCTCCCTATTCGGGTGTGGAGCGGCTGGCAGTTCCCGCGATCCGGCTCCGTCGCCGGCGCCGTTTTCCGCCATTTGAGGTTCGCTTCTTCGTACCTTGGAATTCTATTCTGTGATTGGGATGAGAGAAGTTCAATGCTTTTATATCCAGACTATTGTAGGAAGACTCATGGAGCAAAAGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTGGGTTGCAAGCTCCATTACTGTGAGAGCAATTCTTCAAGGAAAAGGCTATTCGAACTTCATGAAATTTTTAAGACACTACCTGGTGTAGGAAAACAGCAGACATTTAATAGTTCCAAGATAATACCTATGGATACAACTTGCAGATCAGGCATTTGGGAAATATCTGATGATATTTTAACTAAAATTTTAGCTTCCCTGGGCCCAATGGACCTCACTAAGGCTTCTGCAACATGTCATCATCTCAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTACCCCATCCTTTATATGTATCTCTCTCAACTGATGATGGCTTTAATTTCCATGTAAATACTGTATCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACGCGAGGTACACTGGCAGACCCGCTAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAGTCGGAAATGTGGCTATTATGAGATTAGTGGTAATAACATCACTGGTTGTATTACCTTGGGTAAGAGGGATGTGTCCCAAGATACCAGTAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCCAGATTGATAGATCCTGATCAGCAAATAACTAAACCTCATTATTCATGTTCCAGGGAAGAAAAAAAATCACCTGTAGGTGCATGCTTTAAGGAATCTATGCATTCAAATCGGTCTCCTAGGAGTTTGAGTCGCATAAAGAAAAATATAAATTTCACATATGAAGAGGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAGGGATTAATTAAAGCAAAGCATGCACCAGATGTTACATCTCATGTATCTCAAAACAAGCAACCTTGGAAGCCTAAAGGTGATCGTTTGGAGTTCAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACAATAGTATAGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACATTGACCCTTTATATCAAAGTTGTAGTGTCCCTGAACAATATTTTCATAATACCTGTAAGATAACACACTTGCCAGGGTTTTACTTGAAAGGAACTCATGGTGGTGAGAAACAAAATGTTTCTTTTTTCACTAGTGTGCTTAAGGAGCACTACTCAATGATAAATTCTCAGACAAAGAAGGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACATATGGCATAAGGGGTCCTATTTTAAGCACTTGTACTGCATCTAATGGACATTTCAATGCATTCCACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGAGAAAGGTGTGTGCAAGTGGTACTACCCACAAAATCTTAACCATTTGACGTTTGATGTGTCTGCCCTTGGCATGGCTCTCCGTGAGCCATTAGATTTTGTAAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAACTGCGTGTTTATGTTTGGACTGATCATCGGAAGCCATCTGTTCATTGTCTTGCGTGGGATTATGATGTCGTCATCACTACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGATCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATACTAACAGGAACTCCAACACCTAACACTCCTAACAGCCAACTTCCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGATTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTACATTTACTTCATAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCATCAAGAAATTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTACGACGTAATATATTGATGGCTGACTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCGGGACATGTTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGATCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGCTTATTACACCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGTAGAAAATTGTATGAGATGCAGAGTAGACTGCCCCGGCCTGAAAATCCTAAACCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCATGGTTTATGACTAACTCAGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTGAAAACTTTGCGAGGAACCAATGAAGAGGCAAGCTTCAATACAGACAATAGCAATGATGGATTGCATATTGAGAGTACTTTCTATCTGCCTAGAAGAGATGACAAATCATTGATTCAGAAATGTTCTATGAGCAGCACTAAGACCAATTTGAACCCTGACAAGGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAACCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGACATTTTACAGGATGCTGACAAATTTAGAAAATCACCGATTAAGGATGTTGCCGAATCTGAAGATGATAGTGGGGGTCGAGGATATAGATCATTGCATGATTTTGCTGAAAGCAGTTATCTACTGAAACTTAGATCTGTGTATACTAATACAGAAAGTCCAGAAGGTTTGTGCATAGTGTTTTTCCCTAACCCTGTTTTTGTTAGGAAACATAATGATTTGGGAAATTGA 4059 0.423 MSTDISFADHKLCGFLCAVLTVAERGDDDPAFAERCEIFSDAGVLGFRTQTGVVLSPLDSSQCGGGGSKTKRTKKIGMVNGSVSVVHQLHAMVTRKCTKIDARVVCVEVPRVVLLVDVYLPIRVWSGWQFPRSGSVAGAVFRHLRFASSYLGILFCDWDERSSMLLYPDYCRKTHGAKESIWNLSDCHVLGCKLHYCESNSSRKRLFELHEIFKTLPGVGKQQTFNSSKIIPMDTTCRSGIWEISDDILTKILASLGPMDLTKASATCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYVSLSTDDGFNFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPLDGAQVVWCQHNGSRKCGYYEISGNNITGCITLGKRDVSQDTSRTNDNHDYSSKRARLIDPDQQITKPHYSCSREEKKSPVGACFKESMHSNRSPRSLSRIKKNINFTYEEEAMISKEREIGEGLIKAKHAPDVTSHVSQNKQPWKPKGDRLEFSDTWIQCDACHKWRKLADNSIANSSAAWFCSMNIDPLYQSCSVPEQYFHNTCKITHLPGFYLKGTHGGEKQNVSFFTSVLKEHYSMINSQTKKALTWLAKISTDKLAGMETYGIRGPILSTCTASNGHFNAFHKIFQAFGLLKRVEKGVCKWYYPQNLNHLTFDVSALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKFVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHVKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCRKLYEMQSRLPRPENPKPKWPVPKDLIELQPSYKQAWFMTNSDNWDPDWQSTSSSKVSYLVQRLKTLRGTNEEASFNTDNSNDGLHIESTFYLPRRDDKSLIQKCSMSSTKTNLNPDKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSNKKKSLTMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLDILQDADKFRKSPIKDVAESEDDSGGRGYRSLHDFAESSYLLKLRSVYTNTESPEGLCIVFFPNPVFVRKHNDLGN 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1523g00001 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 367 IPR027417 -
Mupr1523g00001 1352 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 247 1281 - -
Mupr1523g00001 1352 Pfam CW-type Zinc Finger 531 574 IPR011124 GO:0008270
Mupr1523g00001 1352 ProSitePatterns Zinc finger RING-type signature. 1022 1031 IPR017907 -
Mupr1523g00001 1352 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1143 1301 IPR001650 -
Mupr1523g00001 1352 Gene3D - 1071 1319 IPR027417 -
Mupr1523g00001 1352 SMART ultradead3 282 855 IPR014001 -
Mupr1523g00001 1352 Pfam SNF2-related domain 289 930 IPR000330 GO:0005524|GO:0140658
Mupr1523g00001 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 1311 IPR027417 -
Mupr1523g00001 1352 SUPERFAMILY F-box domain 235 277 IPR036047 GO:0005515
Mupr1523g00001 1352 CDD SF2_C_SNF 1158 1265 - -
Mupr1523g00001 1352 ProSiteProfiles Zinc finger CW-type profile. 526 577 IPR011124 GO:0008270
Mupr1523g00001 1352 Gene3D - 695 888 IPR038718 -
Mupr1523g00001 1352 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 679 844 IPR014001 -
Mupr1523g00001 1352 Gene3D - 526 579 - -
Mupr1523g00001 1352 SMART fbox_2 244 284 IPR001810 GO:0005515
Mupr1523g00001 1352 SMART helicmild6 1173 1255 IPR001650 -
Mupr1523g00001 1352 Pfam Helicase conserved C-terminal domain 1154 1255 IPR001650 -
Mupr1523g00001 1352 CDD F-box_SF 243 275 - -
Mupr1523g00001 1352 CDD DEXDc_SHPRH-like 708 885 - -
Mupr1523g00001 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 883 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1523g00001 714 1275 RAD5 or RAD16-like Gene Family AT5G22750 25.249 3.25e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1523g00001 SNF2_N 7.1e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1523g00001 - - gmx:100803102 2361.26