Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15207g00002 ATGGCAACGTTAGAATCTGGTATGACCCTGTTGGTGCCCCAACGGTATGGTTTCCTTGCAAGAGCACCGCACTCCGTTAAGCTCCATGCTTCGACCTCCCTTCTCTTCTCTTCTAAGGCCTCTTTCAAAACCGGAAGGCTCTGCTTTCAGTTATGCTCCGCTTTGCAAGAGCTACCCACAACGGACCAAACACCTCAATTAACAGACAACGTCAAGAAGCTCTACGTCGTTAACTTGTCTTGGTCTCTGTCTGCGTCTGACCTCAAAGACCTCTTCGCCCAATGCGGAAACGTAACCGACGTCGAGGTTGTTTTTAAACTCTCTCCGTTGCCCTTGCTTTTCGGTTATATAATAAAGAACAAAGATGGGAGGAGCAGGGGCTATGCCTTCGTTACCATGGCTTCCGAGGAAGAGGCTCAAGCTGCTGTTGCTAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCTCCACCTCCTCCAGGTCCCCGTACTGGAGAGACACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAAACAAGTCTTCACTGAAAATTTCAAAGCACCAGTTTCAGCAAGGATTGTCTTTGACAGCCCTTCTGGACGATCTGCTGGATACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAAAGAAGCTGGAAGTGAACAAGATGAAGACCAAGGTTCTGATGCTCAACTGGAAGAACAATAA 855 0.4643 MATLESGMTLLVPQRYGFLARAPHSVKLHASTSLLFSSKASFKTGRLCFQLCSALQELPTTDQTPQLTDNVKKLYVVNLSWSLSASDLKDLFAQCGNVTDVEVVFKLSPLPLLFGYIIKNKDGRSRGYAFVTMASEEEAQAAVAKFDSYELSGRIIRVELAKRFKKPPPPPPPPGPRTGETRHVIYASNLAWKARSTHLKQVFTENFKAPVSARIVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKEAGSEQDEDQGSDAQLEEQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15207g00002 284 MobiDBLite consensus disorder prediction 255 284 - -
Mupr15207g00002 284 SUPERFAMILY RNA-binding domain, RBD 72 263 IPR035979 GO:0003676
Mupr15207g00002 284 Gene3D - 165 276 IPR012677 -
Mupr15207g00002 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Mupr15207g00002 284 PANTHER OS02G0815200 PROTEIN 69 262 - -
Mupr15207g00002 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 163 IPR000504 GO:0003723
Mupr15207g00002 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 106 IPR000504 GO:0003723
Mupr15207g00002 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
Mupr15207g00002 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 156 IPR000504 GO:0003723
Mupr15207g00002 284 CDD RRM_SF 74 159 - -
Mupr15207g00002 284 MobiDBLite consensus disorder prediction 255 272 - -
Mupr15207g00002 284 Gene3D - 55 164 IPR012677 -
Mupr15207g00002 284 SMART rrm1_1 73 159 IPR000504 GO:0003723
Mupr15207g00002 284 SMART rrm1_1 184 258 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15207g00002 Mupr-Chr15207 19875 24201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15207g00002 74 271 Eukaryotic Initiation Factors Gene Family AT2G23350 24.121 7.83e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15207g00002 - - gmx:100793319 408.683