Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15078g00001 ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACGACGAACCGCCAGGTCACTTACTCCAAACGACGGAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGTGACGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTAGGAGTTGATCTCTGGAACTCTCACTACGAGATTTACTGCTTCCTGCCTTGGAAGTTGGAATATATTATATCTTCATTTCTTCGCCAGAATATGCAAGACAACTTGAAGAAACTCAAAGAGGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTCAACGATCTGAACATGGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCTGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGACTTGGTATGTATTTTAGCATACGTTTTTGTTGATTTTAATATATGTAAT 606 0.4307 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTLGVDLWNSHYEIYCFLPWKLEYIISSFLRQNMQDNLKKLKEVNRNLRKEIRQRMGDCLNDLNMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLVCILAYVFVDFNICN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15078g00001 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr15078g00001 202 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr15078g00001 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr15078g00001 202 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Mupr15078g00001 202 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mupr15078g00001 202 Pfam K-box region 103 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr15078g00001 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr15078g00001 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr15078g00001 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr15078g00001 202 Coils Coil 103 130 - -
Mupr15078g00001 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Mupr15078g00001 202 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mupr15078g00001 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr15078g00001 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15078g00001 Mupr-Chr15078 6899 9917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15078g00001 1 187 MADS-box Gene Family AT3G54340 55.080 1.45e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr15078g00001 K-box 5.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15078g00001 K09264 - gmx:547720 301.212