Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr15065g00001 ATGGATGGTGGGAGTGAAGGAACTGGTGAGCTCAAAGCAATAACGGTTGGAGATTCTGACCTTTCACTTTCATTACTCATGATGTCGTATCAACCAACGGAGGAGAGAAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGTGGCCACATCAGGACTCACATGATGAGTGAGCATTCACATTCACATTCACATTCACATTCGGTTCAAGGCAATGAAGAGAGAAGCAATGCTTCTAATGCTATGTTCAAGTTTGATGGTGGGAGGAAGAGGAAGAGGGATTTGGGGTCTGAAGGTGGTGGGGATGGTAGTGGAGGAAACAGTAACATCATTTATGGCCTCAGAGAGAACCCCAAGAAGACCACGAGGTTTGTGCACTCCAATGCCACTTTGCAACTTGACAAGTTCTGCAAAGAATGTGGGAAGGGTTTTCCATCATTGAAGGCTCTGTGCGGTCACATGGCTTGTCACTCTGAAAAGGACAAGGGAGCCAGCAACATCAACAGCAACAGGTTTGAGAGCAGTTCTGCCTTTGTTACTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGACACTGAAACTTCTGCTCCGAGGAGGTCCAAGAGAATGAGGTTCAAGACCCTTAGCAACAGCAATAACAATCAACCTCAATCTTCTTCTGTATCCGAGGTTGAGCAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGATGTTGTCTAAGGATTCTAGCCATAGGGGTCGTTTTGCTTTGGTCACAGAGTCTTCTGACAACAACTCGGTTGTTCTAGAGGCAAAGTCGCCTTCTCTTGAAACCAAGGTAACTACTATGATGAATAGTAATGGTAAGAATTCTATGTCTAGTGCTTATGTGGAGAAGAAGCTGGAGCTGCAGAACAAGGACATCAAGTTTAAGTCTGCTGAGGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTCAGATATGGTCCTAAGTCGGATGATTCAAATGATGGGTTTTTCAGGAGTGAGGTTAAGTCTTCGAAAGTGGGGTACTTGTCTGGGTTTGAGGAGTATGATGTTGAATCGAGGAAGGTGCTGAGCAGAGGAAGAAGCAGGAGCAGTGAATTTAAGAAGTTTGTTAGGGAGGATTGGGAGAATGAGAGAGAAGGGGTTGCTGCAAGGAAATTTGATTTAAAGAAGTTTAAGAAATCCAACTATGATTCTCTTGGTCAGAATTTAGGTGGGGCTTCTAGCAGGAAGGTTGGAAATGGTTTTGCCAATGATGGGATCAACAAGTATGAGTGCTTGACTAGTGAAAGGGACAATGGTTCTGATGATTCGGCTTATGAGAGTGATGAGAACAGCACAGACACTGATTCTTATCCTGCTCCAAAGGCTCACAGCAACAGGAACCTCAGTGGCCAGAAGGGGAAGAAGAAATTGAAGACAAAGAAAAGCAAGGCACATGAGTGCCCAATCTGCAACAAAATTTTTAGGTCAGGCCAAGCCTTGGGGGGCCACAAAAGATCCCATTTTGTTGGAGGGTCTGAGGAGAACACCCTGGTGATAAGGCCAGGTGCTCCTGCTGTTCCTTGCCTCATTGATCTCAATCTACCTGCACCTGTTGATGAATAG 1638 0.4505 MDGGSEGTGELKAITVGDSDLSLSLLMMSYQPTEERKFVCKYCSKRFPCGKSLGGHIRTHMMSEHSHSHSHSHSVQGNEERSNASNAMFKFDGGRKRKRDLGSEGGGDGSGGNSNIIYGLRENPKKTTRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKDKGASNINSNRFESSSAFVTEKQKLVMDSQSDTETSAPRRSKRMRFKTLSNSNNNQPQSSSVSEVEQEQEEVARCLMMLSKDSSHRGRFALVTESSDNNSVVLEAKSPSLETKVTTMMNSNGKNSMSSAYVEKKLELQNKDIKFKSAEVGYDSDNSDSGYFRYGPKSDDSNDGFFRSEVKSSKVGYLSGFEEYDVESRKVLSRGRSRSSEFKKFVREDWENEREGVAARKFDLKKFKKSNYDSLGQNLGGASSRKVGNGFANDGINKYECLTSERDNGSDDSAYESDENSTDTDSYPAPKAHSNRNLSGQKGKKKLKTKKSKAHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPGAPAVPCLIDLNLPAPVDE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr15065g00001 545 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Mupr15065g00001 545 ProSitePatterns Zinc finger C2H2 type domain signature. 492 512 IPR013087 -
Mupr15065g00001 545 SMART c2h2final6 141 163 IPR013087 -
Mupr15065g00001 545 SMART c2h2final6 38 60 IPR013087 -
Mupr15065g00001 545 SMART c2h2final6 490 512 IPR013087 -
Mupr15065g00001 545 MobiDBLite consensus disorder prediction 63 119 - -
Mupr15065g00001 545 MobiDBLite consensus disorder prediction 437 486 - -
Mupr15065g00001 545 MobiDBLite consensus disorder prediction 213 232 - -
Mupr15065g00001 545 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Mupr15065g00001 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Mupr15065g00001 545 MobiDBLite consensus disorder prediction 189 233 - -
Mupr15065g00001 545 Pfam C2H2-type zinc finger 38 61 - -
Mupr15065g00001 545 Pfam C2H2-type zinc finger 143 165 - -
Mupr15065g00001 545 Pfam C2H2-type zinc finger 489 512 - -
Mupr15065g00001 545 SUPERFAMILY beta-beta-alpha zinc fingers 28 61 IPR036236 -
Mupr15065g00001 545 Gene3D Classic Zinc Finger 17 96 - -
Mupr15065g00001 545 SUPERFAMILY beta-beta-alpha zinc fingers 142 512 IPR036236 -
Mupr15065g00001 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 490 512 IPR013087 -
Mupr15065g00001 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Mupr15065g00001 545 MobiDBLite consensus disorder prediction 455 472 - -
Mupr15065g00001 545 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr15065g00001 Mupr-Chr15065 5772 8170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr15065g00001 34 545 C2H2 Transcription Factor Family AT1G26610 39.568 1.87e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr15065g00001 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr15065g00001 - - gmx:100805520 718.768