Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14971g00005 ATGGATGAAATTGAAATTCCTGCCCATTTCCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACGGTTTGCACAGGAATCACCTACGATAGAGAAAACATAGAAAGATGGTTATTTTTTTGCAAGAACAACACATGCCCCGTTACCAAGCAGTGCCTAATGGACAACGATCTTACCCCAAACCACACTCTTCGAAGGTTAATCCAAGCTTGGTGCACCCTCAACGCCTCACTCGGAGTTGAACGCATTCCAACTCCAAAGCCACCAATTGACAGAACACAGATTATGAAACTCCTCTCAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAGTGCCTCACGAGGCTTCGATCCATTGCCTTCGAGGGCCAAAGGAACAAAACGTGTTTGGAGTCAGCAGGAGCAATAGACTTCTTGGCCTCAACCATGAAGCACAACAACAACACCACACAAGAAAACTCAACCCTTCTCAGTGAAGCAGCTATCGAAGTCTTGTTCCACCTCAACCTCTCCGAGGCTCACCTTAAAGCCCTTGTCAACAACGAGGCCATGAAGTTCATCGACTCATTGTTTTACGTGCTGAGGCTTGGGAACTACCAATCTAGAGCCTATGCAACCATGTTAATGAAGTCAGCATTTGAGGTAGCTGATCCAAGTCAGTTAATCAGCGTCAAAACGGTGCTGTTCGAGGAGATCATGCGTGTGCTGCGCGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTTATAGTGGAGCTATTTCCGTGGGGCAGGAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTGGGTCCTCATTGAGCTTCTTCTGGGTGCCTCTGAGAGAAGGGTATGTGAACTGATTTTAATAGCTTTGGACCAGCTTTGTGGGTGCGCAGAAGGGCGTGCGGAGTTGTTGAACCATGCGGCGGGAGTGGCCGTTGTGGCCAAGAAAATTCTGAGGGTTTCCCTTGTGGCCAGTGACAGAGGAGTTAGAGTTTTGGCCTCAGTTTGTAGGTACTCGGCCAATGCTAGAGTGCTGAGTGAGATGTTGCAGGTTGGGGCTGTGTCCAAGTTGTGTTTGCTGCTTCAAGTCAATTGTGGTTTCAAGACTAAGGAGAGGGCCAAGGAGATACTCAAATTGCACCAAGCAGTTTGGAAGAACTCCCCTTGTATTCCTCTACCTTTGCTTTCTTCCTATCCCTGA 1218 0.4836 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFFCKNNTCPVTKQCLMDNDLTPNHTLRRLIQAWCTLNASLGVERIPTPKPPIDRTQIMKLLSEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGAIDFLASTMKHNNNTTQENSTLLSEAAIEVLFHLNLSEAHLKALVNNEAMKFIDSLFYVLRLGNYQSRAYATMLMKSAFEVADPSQLISVKTVLFEEIMRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVWVLIELLLGASERRVCELILIALDQLCGCAEGRAELLNHAAGVAVVAKKILRVSLVASDRGVRVLASVCRYSANARVLSEMLQVGAVSKLCLLLQVNCGFKTKERAKEILKLHQAVWKNSPCIPLPLLSSYP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14971g00005 405 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
Mupr14971g00005 405 CDD RING-Ubox_PUB 7 60 IPR045210 -
Mupr14971g00005 405 Gene3D - 95 391 IPR011989 -
Mupr14971g00005 405 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Mupr14971g00005 405 SUPERFAMILY ARM repeat 107 370 IPR016024 -
Mupr14971g00005 405 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Mupr14971g00005 405 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Mupr14971g00005 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Mupr14971g00005 405 SUPERFAMILY RING/U-box 3 77 - -
Mupr14971g00005 405 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14971g00005 Mupr-Chr14971 54499 55716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14971g00005 2 405 U-box Gene Family AT2G35930 55.637 8.40e-159 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14971g00005 - - gmx:100778012 714.531