Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1496g00002 ATGAAGTTAAAAAAGTGTGAAGCAACGAGCGAAAATGTGGCCAACGACAGCACGGGTAGTGTCTTTTCACGGAATTTGGGAACCAACACACCGTTGATTGATCAACACTTGCCACCGCATGGGCAAGTTTCAGTAAATGACCTTACTCTCTATATTGAGACCCGAGGCAACAGACAGGTTTTGATAGTAAATATCGGCAGAAAACGGGGCAAAGTCACTATTTTTCGCGGTCCTTTCATCCTCCCAACTTCTCTGAAATTCAACTCATTCATTCCGTTTTCCCCTTGCTCCCCCGTCCTTTCTTCACCGTTTCCTCTGTCAGGGTTTGAAATGGAGACGAAGAACAAAGTGAAGAACGAGGATCCTTCTGTGGAGTCTCCAACTTCGGTTCTCGAAGACGAGGATGTCTGTGACTTGAAAGAGGAAGTTAAGTTGGAGGAAGAGGCGATTGCTGATGTTAAAGACGATGGGTCCTTTCTTATATCGAAAACTATGGCAGAGGAGGAAGAAAAGTTACATGAAGCTAGGATCAAGGAAGAGGAGGCACAGTGTGAGGAGGCACTCGACCTCAATGACACACAGTTTAACAAATTGGATGAGCTTTTAACTCAAACCAAACTGTACTCCGAGTTTCTGCTGGAGAAAATGGATGACATTACACTTACCACTGGTGAACAAGAGAATGGGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAAGAAGGGCCGTGGATCGAAAAGAAAAGCTGCTTCACAGTATAATACTAGGAAAGCCAAAAGGGCAGTTGCTGCCATGCTCACCAGATCTAAAGAAAGTGAGGGGACTGAAGATACAAACATGAGTGAGGAAGAAAGAGTTGAGAAAGAGCAGAAGGAGCTCATGCCTTTATTGACAGGTGGAAAATTGAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATAGGATTTCTCTCACATCTAAAAGCAAAAGGTCTGGATGGACCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAGATTTCTAGGTTTGCACCATCACTCTCTGCCATTATCTACCATGGTGACAAGAAACAGAGAGATGAAATACGAAGAAAACATATGCCTACTAGAACAATTGGCCCCAAATTTCCCATAGTCATAACTTCTTATGAGGTTGCTTTAAATGACGCTAAGAAGTATTTCAGGTCATACGATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAAGGCATTGAAATACATCAATGTTGAAAACAAGCTTCTTCTAACCGGAACTCCTCTTCAGAATAACTTGGCAGAGCTATGGTCTCTGTTGAACTTTATTTTGCCTGATATTTTTGCATCCCTGGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAATAACAGTGCAACCAAGGAAGAGCTGGAAGAGAAACGAAGAGCTCAAGTAGTAGCAAAGCTTCATGCCATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCACGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGACTTTGCAGGATCATTTAGTTAATAAGACGTTGGGGAACTATTTACAAGAAAATTTGTCAATTGGACATGCTGCAGGTAAGATTCATAATTTGGTTATTCAACTTAGGAAGGTGTGTAACCATCCGGATCTCCTAGAATCAGCCTTTAACGATTTGTATCCTCCTGTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGATCGATTGCTGCAACGTTTATTTGCAAGGAAACACAAAGTTCTTATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATAGATGGCAATGTGAGACTGGATGAGAGGAAACGACAGATCGAGGATTTCAATGATGCAAATAGCAATTGCAGAGTCTTTCTTCTCTCTACTAGGGCCGGTGGATTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGCCAAACAAAACCTGTTCATGTTTACAGACTCTCAACAGCTCAATCTGTAGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTAGAGCATGTAGTGATTGAGAAAGGACAGTTTCATCAAGAACGTTCAAAGTCTGTCAGTATGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGTTTCGAGACGAAGAAACAGCCGAAGATAAAATGATACAAACAGAGATTAGTGATGAAGACCTGGAGAGGATTTTGGATCGCAGTGATCTCATGGTCAATAACTCAAACGATGATAACGTTAGAGCACCAGAAAGTGGGTTTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGATTCCAACTGCGACTGGGGGCATGCTCTCTACTCTTAACAGCTAG 2610 0.4169 MKLKKCEATSENVANDSTGSVFSRNLGTNTPLIDQHLPPHGQVSVNDLTLYIETRGNRQVLIVNIGRKRGKVTIFRGPFILPTSLKFNSFIPFSPCSPVLSSPFPLSGFEMETKNKVKNEDPSVESPTSVLEDEDVCDLKEEVKLEEEAIADVKDDGSFLISKTMAEEEEKLHEARIKEEEAQCEEALDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLTTGEQENGEEQESNPSAKKKGRGSKRKAASQYNTRKAKRAVAAMLTRSKESEGTEDTNMSEEERVEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLSAIIYHGDKKQRDEIRRKHMPTRTIGPKFPIVITSYEVALNDAKKYFRSYDWKYLVVDEGHRLKNSKCKLVKALKYINVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNSATKEELEEKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKTLQDHLVNKTLGNYLQENLSIGHAAGKIHNLVIQLRKVCNHPDLLESAFNDLYPPVNEIVEQCGKFHLLDRLLQRLFARKHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGNVRLDERKRQIEDFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERSKSVSMDEMEEEDVLALFRDEETAEDKMIQTEISDEDLERILDRSDLMVNNSNDDNVRAPESGFPLKGPGWEVVIPTATGGMLSTLNS 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1496g00002 869 SMART ultradead3 298 494 IPR014001 -
Mupr1496g00002 869 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 483 IPR014001 -
Mupr1496g00002 869 Pfam Helicase conserved C-terminal domain 627 737 IPR001650 -
Mupr1496g00002 869 CDD SF2_C_SNF 613 747 - -
Mupr1496g00002 869 Gene3D - 268 532 IPR038718 -
Mupr1496g00002 869 Gene3D - 539 839 IPR027417 -
Mupr1496g00002 869 PANTHER SNF2/RAD54 HELICASE FAMILY 146 827 - -
Mupr1496g00002 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 824 IPR027417 -
Mupr1496g00002 869 FunFam ATP-dependent DNA helicase DDM1 296 542 - -
Mupr1496g00002 869 FunFam Chromatin complex subunit A 106 543 768 - -
Mupr1496g00002 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 533 IPR027417 -
Mupr1496g00002 869 Coils Coil 163 190 - -
Mupr1496g00002 869 Coils Coil 272 292 - -
Mupr1496g00002 869 SMART helicmild6 653 737 IPR001650 -
Mupr1496g00002 869 Pfam SNF2-related domain 305 603 IPR000330 GO:0005524|GO:0140658
Mupr1496g00002 869 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 627 783 IPR001650 -
Mupr1496g00002 869 MobiDBLite consensus disorder prediction 264 291 - -
Mupr1496g00002 869 MobiDBLite consensus disorder prediction 223 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1496g00002 Mupr-Chr1496 10680 16436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1496g00002 288 758 RAD5 or RAD16-like Gene Family AT3G16600 25.473 2.73e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1496g00002 SNF2_N 2.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1496g00002 K19001 - gmx:100777687 1337.01