Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1465g00001 ATGCTGAGTAACAGCACAATTGATGGCACAATAACAGGCAACGGCAGTAGTGGCGCAAGGTGGAGCTCTGGCAGTTGCAAAGGAGAGGTCCAGCGACACAATTCAGAGATTTTTGAATGGGGGTTTAGGTATGTACCGTCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAATCAAGAAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGCTGAGGGAAAGGCGAAATCAAGAACGTGAACATTGGCGTGATGGGCGTCATGCAGAACATTCTACTTCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTTCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTTATGAACAGAGCTGATGGACAGGCAGCGAAAGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCACAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATCTTGTCTGGTCCTTCAGGTCCGCCCGTAACATCTGTGCCGAATCAGAATTCTGAACTGAATAACTTTATGGTTCTTACTCCTAATATTCCTGATATAGTGGTTCTAACTCCTAATGTTCCTGATATAATGGTTACGCCTCCTGAGGATGAACATGTAAGGCATGTAATTGATACAATGGCTTTGTATGTCTTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGAAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACATACCTACTATGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGAGAACTGAACCTTTCATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCATTACCAACATCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGTTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGCGAGATAGTTGAAGTTTTGACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCCTATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTATCGTAGTGTAATGGGGCGTATTACTGCTGAAGCCTTAAAGGAACGAGTGCTGAAAGTTTTACAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTCCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCACTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGACCACTTCCGAAGATACAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTAGCAATGGGTCGAGGAGCTGCAATGAAAGAGTTAATGAATCTTCCACTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAGAGGTGTTATGAACTAGATGACGAATTGAAATATGCCCACAACCAGGTGAGTTCTGGGAAATATTCAAGTAATCGGCGAGAAACAAGTGCAGAGCCTGAACCTGTAGGACTCTCTGCATGGAGCCACTATGAGGATGAAGATTTGCAGTCACAGGGAAGAAGTTCTGTATCTTTAGCCTCAACCTTCCCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAGGAGAAGAATGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAACAAAGGAGAAGTGGAAAAAATCTTGGCTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGGTCTTATTAAAGCTGATGAATTGGAGTCTGCAGCTGATACAAGTTTTTCAGCTCATGCTGACAGTGGAATGAACGAAGAACAGAGGCAAAAGCTTAGACGGTTGGAGGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTTCAGTCACATAGGAAACGTCTGCAAGCGGAGTATGGATTATCAGATTCTGGTGAAGATGGTCAAGGCAATAGAAGAACTTCAGAGAGGAGGGATAGGCATGATGTTTCAAGGAAACGGCACCGTAGCCGTAGTCCAAGTGGTAGTCCACAGCCAAAATTATCAGGCAAAGACAGAGACAGAGAACATGATCTAGAAAGGGATCGAGACAGACAAAGAGATAGAAGTCATGATTTGGATAGTGATAGAGGAAGGGACCGGCACCGGGAGAAGAGTGGAAGCCGAGAGAGGGATGACCATGATAAGGATAGAGGCAGGGATAGGGATAGGGACAGGGACAGGAGAAGACGGACCAAATAA 2838 0.4415 MLSNSTIDGTITGNGSSGARWSSGSCKGEVQRHNSEIFEWGFRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQEREHWRDGRHAEHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPNQNSELNNFMVLTPNIPDIVVLTPNVPDIMVTPPEDEHVRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSVMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDTVVGGKTNQDAALAMGRGAAMKELMNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRCYELDDELKYAHNQVSSGKYSSNRRETSAEPEPVGLSAWSHYEDEDLQSQGRSSVSLASTFPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRRSGKNLGLSYSSSGSENVGDGLIKADELESAADTSFSAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVQSHRKRLQAEYGLSDSGEDGQGNRRTSERRDRHDVSRKRHRSRSPSGSPQPKLSGKDRDREHDLERDRDRQRDRSHDLDSDRGRDRHREKSGSRERDDHDKDRGRDRDRDRDRRRRTK 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1465g00001 945 Coils Coil 817 837 - -
Mupr1465g00001 945 Gene3D Surp module 292 361 IPR035967 GO:0003723|GO:0006396
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 56 126 - -
Mupr1465g00001 945 SMART cwf21_2 790 839 IPR013170 -
Mupr1465g00001 945 Gene3D - 53 226 IPR012677 -
Mupr1465g00001 945 Gene3D - 790 841 - -
Mupr1465g00001 945 Pfam cwf21 domain 791 837 IPR013170 -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 388 414 - -
Mupr1465g00001 945 SUPERFAMILY Surp module (SWAP domain) 284 361 IPR035967 GO:0003723|GO:0006396
Mupr1465g00001 945 SUPERFAMILY ENTH/VHS domain 418 555 IPR008942 -
Mupr1465g00001 945 CDD RRM_SR140 142 225 IPR035009 -
Mupr1465g00001 945 Pfam Surp module 304 356 IPR000061 GO:0003723|GO:0006396
Mupr1465g00001 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 224 IPR000504 GO:0003723
Mupr1465g00001 945 SMART 558neu5 421 556 IPR006569 -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 717 749 - -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 662 676 - -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 662 681 - -
Mupr1465g00001 945 PANTHER RNA PROCESSING PROTEIN LD23810P 43 875 - -
Mupr1465g00001 945 ProSiteProfiles SURP motif repeat profile. 306 349 IPR000061 GO:0003723|GO:0006396
Mupr1465g00001 945 ProSiteProfiles CID domain profile. 414 559 IPR006569 -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 814 839 - -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 49 140 - -
Mupr1465g00001 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 217 IPR000504 GO:0003723
Mupr1465g00001 945 SUPERFAMILY RNA-binding domain, RBD 136 231 IPR035979 GO:0003676
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 1 27 - -
Mupr1465g00001 945 Coils Coil 419 439 - -
Mupr1465g00001 945 ProSiteProfiles SAP motif profile. 608 642 IPR003034 -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 750 764 - -
Mupr1465g00001 945 SMART rrm1_1 144 220 IPR000504 GO:0003723
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 880 945 - -
Mupr1465g00001 945 CDD cwf21_RRC1-like 790 839 IPR047491 -
Mupr1465g00001 945 Gene3D - 414 560 IPR008942 -
Mupr1465g00001 945 Pfam CID domain 421 549 IPR006569 -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 716 772 - -
Mupr1465g00001 945 Coils Coil 791 811 - -
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 381 414 - -
Mupr1465g00001 945 SMART surpneu2 304 358 IPR000061 GO:0003723|GO:0006396
Mupr1465g00001 945 MobiDBLite consensus disorder prediction 814 945 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1465g00001 140 220 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.63e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1465g00001 K12842 - gmx:100776093 1536.55