Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14619g00003 ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATACTAGAGGCAAATGCTACTGCTGAGACAGAATTGGATAAACAAAATGTTGTAGAAGGAGGGGAAGAAGCAAAGGGTGATTCTGGTGGCATTGATAAGCCTTATTTTGTTGAGGTTGATCGGCTGGGTTGGTTGTTGGGTGAACACCTTGATATTTCAGAAGTTGTTTTGAGGGATTTATATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCCGAGGATTTTTATCGGGATTCCCAGTATTTGGTAAGATTTCGGGTGTGTAAGGTTAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGTAAGAAGAGTTACTGTTGACCATGTGGAATCATATACAGTATTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAATTTGAAGTTTGTTACATTGAGGCCAGTTCTTGGGGTTAGGCTTTCAGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAGCGCCTTTGATGCATGCGAGTCACTTCTTGATAATTCTAGACAACTATGGAAAAAGAGTATGATGAATGTAATGTCCTGGCTACGTCCAGAAATAATGACTTCAGATGTTAGGTATGGGTTTGGTAACTGTATGAAAATGGAAGTTGATCCGCAGACAGAGATGGCAGAGGACACTAGCAATGCCAGGCAACATGCAAGGTTTGATCCTGCGGGTTTCTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTCGAGGATGACATGCCAGAGTTGCTTCCTAAATTGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAGTGGAAGAAAGTCAAGTTGAAAGAGAAAGAAATCAGTTTCATTCTCCATTATGTATACCTGTGGATTTTCTGGAGACCAGTTCTCAAATGTTTTTCAATCCAGTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGATTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATCAGCATCTGGAAGTGATATATTAATTGATTTAGAGCCCCAAGTTAATAGGGACCAAAAAGTCACTTTGAAAAGACTTAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAATGGAAAATATTTGAAATCAAAACAAGGATGTGAAAGCAAGACATACAAAACTACCATAGCTGTGAGAGACGGAGAATATGTATGTCAGATGTGTTTGGAACTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTACCCCAGTGGCGTGATGAAATTACACGTCATACACATCAGGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTTTCTAATACGTCTCTTATGGATATCAGTGACCTTGCTAGTGCTGATATTGTATTAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGGCATGAAGGTGATCGGCACTTCCTGAGATTTCAAAAAAGGTTCCCCGTTATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAGAGTAATGCTACTGCTGCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGGTGGTGCATTACTGGGACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTCGACAAATTCAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGGAATTTACGCACAAAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCGTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGGTTCTGTCTCTTCAAATGGTTCCTCTGATCCTTTAATCACTCACACTGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCATCCCCAGGTCGGAAGTTCTGGGTTGCGTTCCCTGCAGCAGTCACCAATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTCTGAATGCACTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATTACTGTACAGTGAAGCTCTTACTATGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGTTTCAAACTTTGCTTTAATATTGCCATCCAAAGGAAAGCATTTCTCTGGAACTTCTGAATTTAAGATGACCAAAAGGCATTTACTTGATCATTGTCATGTAAAGAGGCAAAAAATAAGTGGTTGTGATGATGTAAATGTAACTGTGCTGTCTGCAGAACCATCAAATGTTGCATCTAGCCTTTCAGAAAATGACTTAAATGAAGATCAGGAATTTGAAAATTTATCAGCCACTTCTGTCAAATCTCTGATGGCAGAGTGTGAAGATTCAAAACAGAAATACTTATCTGTTTTCAGTTCAAAGCTATCTGCAGCTCAACAGGAGTTTAAAAATTCCTACATGCAGGTCTGTAATGCATATCGTGACAACAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAACAAAGATTTCTCAACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATATCTGCTCGTGTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTCTGGATCAGTTAGAGGCCTCTAGAAAAATGCTCCTAGATCGACTGTTAGAAATTGACCAGACAATGGAGAAACCAAAAGAAGAAGATATCGAACGCGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGCATTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACATGGAGGTATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCACAGTTCTACAGCATCTGATGTTGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAGAACTACTGCAAAGCTCGATTAGGAAGGGACACTGTCTCAGCTGCCACCAAGCATTTACATGTTTTTGAGGGAATGCGAAAAGAGTTTGGCCATGCAAGACCTTTGGCATTAGCTCAAGCTCAGTATTTGCGTGCACATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACCTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTATCTGCAGCTAGCTCAAACTTTTCCCATGATAAGTTTATGTCAATGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGCTTTGGTTCAATCTAAGCAAAAACTGCAATTCGAAAGTCCTAATAGTTCTTCAGTCACACGAGAGACAACTGCATTGTCAAACTCTACAGAAGAGAAGGGTGCACCTGTTTCTAAAACTGATGATGAAACTTGCCCAATTTGCCAAGAAAGGCTAGGCAATCAGAAAATGGTTTTTCAATGTGGACATGTTACATGCTGCAAATGTTTATTTGCTATGACTGAGCAAAGACTTCAAAATAGCAAGCTTCATAATCATAATTGGGTGATGTGCCCTACATGTCGACAACATACTGATTTTGGAAACATTGCCTATGCTGTTGATACACAGAATGAATCTTCCAATTCTTCAATGCTGCGTACAATTGACAGCAGTGAAAAATGTGAAGCATCCATTAGTGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATGATAGAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTGCTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGACAGAAAAGGAAGTGAGGGGTCAGCACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCGTTGCTCAATCCAGCTGCCGAAGCTCAAGCAATCAGTCGTGTACATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGATACGGTTGAGGAGAGTATATATAAATTGAACAGAAGCAGGAGCAGTCATTCATTCATCAGTGGGAACACTAGAAATCAAGATCAACCTGTTTTGACACTGAAAGATGTGGAAGCCTTGCTGTCTAGAGCACCACTAACGATGCCAGAAAGTGATGAAAATCCTGACACACACACAAATCTGAGACACTTGCCACCATCAGTGGCCGCTGCAATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5013 0.4049 MGRRKSKPHRSGGIILEANATAETELDKQNVVEGGEEAKGDSGGIDKPYFVEVDRLGWLLGEHLDISEVVLRDLYLREGFSGFELSEDFYRDSQYLVRFRVCKVSNVLGRIKLGHWPVLPYTDIHLEFVRRVTVDHVESYTVLLSGIFDGPDEGVTGLLHLANLKFVTLRPVLGVRLSEEISSLRVRVEVLKSAFDACESLLDNSRQLWKKSMMNVMSWLRPEIMTSDVRYGFGNCMKMEVDPQTEMAEDTSNARQHARFDPAGFYEAIKPSKAEPMLEDDMPELLPKLRPYQRRAAFWMVEREKAVEESQVERERNQFHSPLCIPVDFLETSSQMFFNPVSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGSDILIDLEPQVNRDQKVTLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPNGKYLKSKQGCESKTYKTTIAVRDGEYVCQMCLELIQATESPIASGATLIVCPAPILPQWRDEITRHTHQGSLKTCVYEGVRDTSFSNTSLMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRFPVIPTLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFDKFRWWTDVIRDPYEKGDVGAMEFTHKIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSVSSNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATLLYSEALTMAEEHSEDFRLDPLLNIHIHHNLAEILPLVSNFALILPSKGKHFSGTSEFKMTKRHLLDHCHVKRQKISGCDDVNVTVLSAEPSNVASSLSENDLNEDQEFENLSATSVKSLMAECEDSKQKYLSVFSSKLSAAQQEFKNSYMQVCNAYRDNRTDQNTFWWLEALHHAEQNKDFSTELIRKIEEAISGTSNNSKSSRISARVRSISSLKYQIQTGLDQLEASRKMLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCILCELDELFQDYEARLFVLKNEHGGIISSAEEAVDFQKKNFALNHFLSKLSQSNHSSTASDVGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDTVSAATKHLHVFEGMRKEFGHARPLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELSAASSNFSHDKFMSMTLLSQIKGKLRYLKALVQSKQKLQFESPNSSSVTRETTALSNSTEEKGAPVSKTDDETCPICQERLGNQKMVFQCGHVTCCKCLFAMTEQRLQNSKLHNHNWVMCPTCRQHTDFGNIAYAVDTQNESSNSSMLRTIDSSEKCEASISVKGSYGTKIEAVTRRILWVKANDDRAKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHVAISQFRGKQNDRKGSEGSAPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSSHSFISGNTRNQDQPVLTLKDVEALLSRAPLTMPESDENPDTHTNLRHLPPSVAAAIAAEKRLNEQRT 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14619g00003 1670 CDD PHD_TCF19_like 416 481 - -
Mupr14619g00003 1670 MobiDBLite consensus disorder prediction 1167 1186 - -
Mupr14619g00003 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1337 1416 IPR013083 -
Mupr14619g00003 1670 Gene3D - 345 399 IPR038718 -
Mupr14619g00003 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1454 1625 IPR001650 -
Mupr14619g00003 1670 SMART helicmild6 1482 1574 IPR001650 -
Mupr14619g00003 1670 Gene3D - 482 709 IPR038718 -
Mupr14619g00003 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
Mupr14619g00003 1670 Gene3D - 1417 1652 IPR027417 -
Mupr14619g00003 1670 MobiDBLite consensus disorder prediction 1322 1351 - -
Mupr14619g00003 1670 Pfam Zinc finger, C3HC4 type (RING finger) 1355 1404 IPR018957 GO:0046872
Mupr14619g00003 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1610 IPR027417 -
Mupr14619g00003 1670 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Mupr14619g00003 1670 SMART PHD_3 414 482 IPR001965 -
Mupr14619g00003 1670 SUPERFAMILY RING/U-box 1348 1410 - -
Mupr14619g00003 1670 CDD DEXQc_SHPRH 289 688 - -
Mupr14619g00003 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 686 IPR027417 -
Mupr14619g00003 1670 CDD SF2_C_SNF 1448 1585 - -
Mupr14619g00003 1670 SMART ultradead3 285 658 IPR014001 -
Mupr14619g00003 1670 Coils Coil 1658 1670 - -
Mupr14619g00003 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 32 1669 - -
Mupr14619g00003 1670 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Mupr14619g00003 1670 Pfam Helicase conserved C-terminal domain 1452 1574 IPR001650 -
Mupr14619g00003 1670 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Mupr14619g00003 1670 SMART ring_2 1355 1404 IPR001841 -
Mupr14619g00003 1670 MobiDBLite consensus disorder prediction 1322 1344 - -
Mupr14619g00003 1670 ProSiteProfiles Zinc finger RING-type profile. 1355 1405 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14619g00003 Mupr-Chr14619 21847 36584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14619g00003 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.438 1.54e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr14619g00003 SNF2_N 2.2e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14619g00003 K15710 - gmx:100776659 3024.96