Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1453g00002 ATGAGTGGTTTGGGTGTAGTAGAGTGGCTTAGACCCCTTGTTGAGACCAAGGCTTGGGATTACTTAGTTGTTTGGAAATATGGGGATGACCCAACAAGGTTTATTGAATGGATAGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAATGTTGATGTGTTGAAGCCCAAAGAGGAAGCCGGTGAAGTATGCCACTTGGCTCCCATTTGCAGGGATAACCATTTTCAGCATCCAGTTAGAACAAAGGCTTGTGAGGCTCTTGCCCAGCTTCCTTTTACATTGTCTCTCTATTCTGGTTTGCATGGAGAGGTTGCCATATCACAACAAACAAGATGGCTTACCCAGGTGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAAAAGCTGATACCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGTTGTGTCTCTTTAAAGAAAGAAGCCATATCTGCGCAGAGCCACACGACTCAGAACATCAATGAACATCTGCCACTAAGGGAACAATACTCACAATGGTGGCCACTACCCATGTCAACTTTAACTCCTAGTGTCCATCAGCCTGCAGCAAAACAGTGCAGTTCCCATCCTAGCATTGAAGGACCCTCCAGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCGAAGTTTGTTTGCTTGATTCCACATGAATATCAGAAACAATCAGTTAAAATATCTCCCATCCCCAAAACTAAAATCCTCAAGTACAATAAAACTTCAGGGAAACAGCAGAGAGGTTTGAGTTCCCATTGTGGCAATGGAGAAGAAGATAAATCAAAATTGGTCAAGGAGCCTCAAAAAGAATGCTACCAGGCTAAAAATCTAGTCACAGAGAGGAATAGGAGAAACAAGATAAAGAAAGGGCTTTTTACTCTCCGGTCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCGGACGCGGTTGACTATATAAAGGAATTGCAAACGCAAGTAAAAGAACTCAAAGATGAGGTCAGGGCTTTGGAAGTACAGGACTGTGAGAAGAACACACCACAATTGAGGATGCCAATAGGCAAGGAACAAGAAGGAACCAGAAGTAACCCTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGACACAGATGCAGGTGCAAGCAGAAGTTCATCACATTAGCAAGACAGATTTCTTGATTAAGTTATTCTGTGAGCAGAAGCAAGGTGTGTTCTCAAAGTTGATGGAAGCTATACATTCAATTGGACTGCGGGTGGCTAGTGCCAATATGACCACATTTGACGGCAAAGTTCTGAACATTCTGACAGTTGAGGCAACCAAGCAGGATATTCACCCAAAGAAACTGAAAGAGTATTTAATACAGAAGACAAGTGATGATAGACAA 1434 0.4219 MSGLGVVEWLRPLVETKAWDYLVVWKYGDDPTRFIEWIGCCCRGSCSVNVDVLKPKEEAGEVCHLAPICRDNHFQHPVRTKACEALAQLPFTLSLYSGLHGEVAISQQTRWLTQVDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIEFITAHGCVSLKKEAISAQSHTTQNINEHLPLREQYSQWWPLPMSTLTPSVHQPAAKQCSSHPSIEGPSSGSNPSTEEPSFDSKFVCLIPHEYQKQSVKISPIPKTKILKYNKTSGKQQRGLSSHCGNGEEDKSKLVKEPQKECYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQTQVKELKDEVRALEVQDCEKNTPQLRMPIGKEQEGTRSNPLNQSSSDCTKKTQMQVQAEVHHISKTDFLIKLFCEQKQGVFSKLMEAIHSIGLRVASANMTTFDGKVLNILTVEATKQDIHPKKLKEYLIQKTSDDRQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1453g00002 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 356 IPR036638 GO:0046983
Mupr1453g00002 478 SMART finulus 296 345 IPR011598 GO:0046983
Mupr1453g00002 478 Gene3D - 283 357 IPR036638 GO:0046983
Mupr1453g00002 478 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 198 471 - -
Mupr1453g00002 478 MobiDBLite consensus disorder prediction 260 285 - -
Mupr1453g00002 478 Pfam Helix-loop-helix DNA-binding domain 297 340 IPR011598 GO:0046983
Mupr1453g00002 478 Coils Coil 329 356 - -
Mupr1453g00002 478 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 150 IPR025610 -
Mupr1453g00002 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Mupr1453g00002 478 MobiDBLite consensus disorder prediction 196 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1453g00002 Mupr-Chr1453 6962 9970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1453g00002 6 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 29.923 4.91e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr1453g00002 bHLH-MYC_N 1.6e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1453g00002 - - gmx:100807261 791.956