Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14355g00004 ATGGCTCAACCAACCACCAACGGCGATCTGAACCAGCAGGCTCAGCAGCAGCAGCAGCAGTGGCCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTATCCCGCCACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCCCAGCATTACATGCCCTACGTCCACCACCAGTACCCCCCGCCGCCTCCGCCGCAACAGCAGCAACCGCACCACCACCACCACAAACAATCCTCCGCCGCCTCCTCCGATGAGATCAGGACCATCTGGCTCGGCGACCTCCATCATTGGATGGACGAGAACTACCTCCATAACTGCTTTGCTCACACCGGCGAGCAACTAGCACGGCTTCTTGATGATGTGTTGCCCCACATGCAGGTTGTGTCAGCCAAGGTCATACGGAACAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTGGAGTTCTATTCGCGACCAACAGCTGAGAAGGTCTTGCAGAACTATAATGGCACGATGATGCCGAATACAGATCAGGCGTTTCGTCTGAATTGGGCCACATTCAGTGCTGGGGATAGGCGTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGGCTTTTGCTGGCAGATATTCGTCTATTAAGGGTGCAAAAGTAGTTATTGATTCAAATACTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACTGAGATGAATGGCGTTTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCGACTCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGCTGTGGTGTTGGCTGGTGGACATGCAGCTAATGGTGCGGTGACCCAAGGTTCCCAGTCTGAAGGGGATTTGAACAACACTACTATATTTGTTGGAGGACTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAGGTGATTCCAATGGAAGCCATTATGGTGGTCAGGGTTATGGAGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCTGCTGCAATTCAAGGGGCTTCCTGA 1323 0.4966 MAQPTTNGDLNQQAQQQQQQWPQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHQYPPPPPPQQQQPHHHHHKQSSAASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEQLARLLDDVLPHMQVVSAKVIRNKQTGQSEGYGFVEFYSRPTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQEAFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHAANGAVTQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRGDSNGSHYGGQGYGGQGYGGHGFAVRQNQDIAMQPAAAIQGAS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14355g00004 440 Gene3D - 90 184 IPR012677 -
Mupr14355g00004 440 MobiDBLite consensus disorder prediction 61 87 - -
Mupr14355g00004 440 FunFam Polyadenylate-binding protein RBP47 300 421 - -
Mupr14355g00004 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 383 IPR000504 GO:0003723
Mupr14355g00004 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 270 IPR000504 GO:0003723
Mupr14355g00004 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 174 IPR000504 GO:0003723
Mupr14355g00004 440 CDD RRM3_NGR1_NAM8_like 317 388 - -
Mupr14355g00004 440 MobiDBLite consensus disorder prediction 1 22 - -
Mupr14355g00004 440 SUPERFAMILY RNA-binding domain, RBD 197 291 IPR035979 GO:0003676
Mupr14355g00004 440 MobiDBLite consensus disorder prediction 389 409 - -
Mupr14355g00004 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 278 IPR000504 GO:0003723
Mupr14355g00004 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 185 IPR000504 GO:0003723
Mupr14355g00004 440 CDD RRM1_SECp43_like 92 186 - -
Mupr14355g00004 440 Gene3D - 300 424 IPR012677 -
Mupr14355g00004 440 FunFam Polyadenylate-binding protein RBP47B 90 184 - -
Mupr14355g00004 440 Gene3D - 186 292 IPR012677 -
Mupr14355g00004 440 SMART rrm1_1 319 386 IPR000504 GO:0003723
Mupr14355g00004 440 SMART rrm1_1 92 181 IPR000504 GO:0003723
Mupr14355g00004 440 SMART rrm1_1 200 274 IPR000504 GO:0003723
Mupr14355g00004 440 FunFam Polyadenylate-binding protein RBP47B 186 289 - -
Mupr14355g00004 440 SUPERFAMILY RNA-binding domain, RBD 308 418 IPR035979 GO:0003676
Mupr14355g00004 440 SUPERFAMILY RNA-binding domain, RBD 57 187 IPR035979 GO:0003676
Mupr14355g00004 440 CDD RRM2_SECp43_like 198 277 - -
Mupr14355g00004 440 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 394 - -
Mupr14355g00004 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 390 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14355g00004 Mupr-Chr14355 22430 26004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14355g00004 93 397 Eukaryotic Initiation Factors Gene Family AT4G34110 29.808 2.03e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14355g00004 - - gmx:100814564 642.499