Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14312g00002 ATGGTGCAAATTGACGAAATGAGTGAGAGCACGTCGCGTTTCAAAACCTCGTTGTACGTCGGGGATCTTGACCAGGGCATCACTGAGACGCAGCTCTACGATCTCTTCAACGAGGCTGGCCAAGTCACTTCCGTTCGCATTTGCAGGGACTTGGAAACTCGCCGTCCCCTTGGTTACGGCTATGTCAATTTCAGTAACGCTTACGATGCCGCTAAAGCAATGGAGGAGCTAAATTTCACTCCGCTGAATGGCAAACCCATTAGGGTAACGTATTCTTTTCGGGATCCTAGCATTCGGAAGAGTGAAGCTAACATTTTTGTAAAGAATTTGGATCAGAAAATCGATAACAGGTCTTTTCGTGATATTTTTTTGTCCTTTGGGAATATTGTTTCTTGCAAGGTTGTAATGGATAATTTTGGGCGGTCTAAAGGGCATGGTTTTGTGCAGTTTGAGAGTGAGGCATCTGCACAAGAAGCAATTGAGAGGTTGAACGGCATGCTGATCAATGACAAGAGGGTCTATGTGGGTCATTTCGAGCGAAGGAAGGATAGAGACAGCAAGTTTACTAGTGTCTTTGTAAAAAACCTGTCGCAGTCAACGTCCACTGATGACTTGAAGAGAGTTTTTGGAGAATTTGGAGATATTTGTAGTGCTCTAGTGATACGGGATGAAGATGGTAATTCCAAATGTTTTGGTTTTGTCAATTTTAAAAATACAGATTCTGCTGCTAGAGCTGTGCAGGAGCTTCATGGAAAGAATTTGGATGGTAAGGATTGGTTTGTTGGAAAAGCATTGGCAAAATCTGATTGGGATCTTCTACCTGACTTCAGTACCAAGGATTCTTTCCATGCATATCAACCTTCAAACTTGTATCTCAAGAACTTGCACGATTTTATTGGTGATGCCGATCTCAAGGCACTCTTCTCTAGGTTTGGTAGGGTAACCTCATGCAAGGTTATGCGAGATGAAAATGGAGTTAGTAAAGGATCTGGATTTGTTGCATTTGAGACTCATGAGGAAGCACTTCAGGCTCTTCGTGAGTTAAATGGTTATATGGCTGCTGGAAAGCCTCTCTATGTTTCCTTTGCACAGAAAAAAGAAGAGAGAAGAGCGAGGTTACAGGCACAATTTTCTGAAGTAAGGCCTGTTCCAATAGCCCCTGTTGCACCTCCAATGTTACCATACCCTCCACCGCTTCCTGGACAACATTTTTTCTACCGGCAACCAGTCAAACCACCTCGTGCTCCCATACATCAAGCCGGATTTGGTTATGAGCAGCAATATGTTCCTGGAATGAGACCAAGTGGTACTGCAGTGCCAAGATTCTTTGTTCCAATGGTCCAGAAGGGGCAGCACCCAGGAGGGCACGGGCACCGAGGAGTAGCTGGTCCTACGAAACAACTCCAGAAGCCACCGGCATTGATGCAGCAACAGTTGGTTCCAAGGGGAGCTGTCTATCGTTGTCCTGCTGGCACCAGCATGCAAAATTTTCCACTTGCAGGAGTAACTGAAGGGATGGTATACACTTATGACGTGGGTGGTCAGCCAGTGCCCATTCAGACCCTGTCCATGGCCCTTGCCTATGCTCCTCCTGAACATCAAAAGATTATGCTCGGTGAAGCTTTATACCCGTTAGTAGAAGATCTGGAGCATGATGCAGCACCAAAGATTACTGGTATGCTTTTAGAGATGGACAAGCCTGAAGTGTTACATCTGATTGAGTCACCAGAAGATCTCAGGGCAAAAGTAGTTGACGCCATGCAGGCGTTGAGAAATGATACAGTCGATCAACGGGCTGCACTCTCTCCCGATGACCACGATCTAGAGTTAGAAAAAAAAACCGCGGCAGATTTATAA 1857 0.454 MVQIDEMSESTSRFKTSLYVGDLDQGITETQLYDLFNEAGQVTSVRICRDLETRRPLGYGYVNFSNAYDAAKAMEELNFTPLNGKPIRVTYSFRDPSIRKSEANIFVKNLDQKIDNRSFRDIFLSFGNIVSCKVVMDNFGRSKGHGFVQFESEASAQEAIERLNGMLINDKRVYVGHFERRKDRDSKFTSVFVKNLSQSTSTDDLKRVFGEFGDICSALVIRDEDGNSKCFGFVNFKNTDSAARAVQELHGKNLDGKDWFVGKALAKSDWDLLPDFSTKDSFHAYQPSNLYLKNLHDFIGDADLKALFSRFGRVTSCKVMRDENGVSKGSGFVAFETHEEALQALRELNGYMAAGKPLYVSFAQKKEERRARLQAQFSEVRPVPIAPVAPPMLPYPPPLPGQHFFYRQPVKPPRAPIHQAGFGYEQQYVPGMRPSGTAVPRFFVPMVQKGQHPGGHGHRGVAGPTKQLQKPPALMQQQLVPRGAVYRCPAGTSMQNFPLAGVTEGMVYTYDVGGQPVPIQTLSMALAYAPPEHQKIMLGEALYPLVEDLEHDAAPKITGMLLEMDKPEVLHLIESPEDLRAKVVDAMQALRNDTVDQRAALSPDDHDLELEKKTAADL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14312g00002 618 Gene3D - 513 594 - -
Mupr14312g00002 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Mupr14312g00002 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Mupr14312g00002 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 258 IPR000504 GO:0003723
Mupr14312g00002 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 358 IPR000504 GO:0003723
Mupr14312g00002 618 SMART rrm2_1 289 361 IPR003954 GO:0003676
Mupr14312g00002 618 SMART rrm2_1 17 90 IPR003954 GO:0003676
Mupr14312g00002 618 SMART rrm2_1 190 262 IPR003954 GO:0003676
Mupr14312g00002 618 SMART rrm2_1 104 176 IPR003954 GO:0003676
Mupr14312g00002 618 Gene3D - 99 176 IPR012677 -
Mupr14312g00002 618 SMART poly_2 530 593 IPR002004 GO:0003723
Mupr14312g00002 618 FunFam Poly(A) binding protein cytoplasmic 1 like 280 369 - -
Mupr14312g00002 618 FunFam Polyadenylate-binding protein 98 184 - -
Mupr14312g00002 618 SUPERFAMILY RNA-binding domain, RBD 16 183 IPR035979 GO:0003676
Mupr14312g00002 618 SMART rrm1_1 104 176 IPR000504 GO:0003723
Mupr14312g00002 618 SMART rrm1_1 17 90 IPR000504 GO:0003723
Mupr14312g00002 618 SMART rrm1_1 190 262 IPR000504 GO:0003723
Mupr14312g00002 618 SMART rrm1_1 289 361 IPR000504 GO:0003723
Mupr14312g00002 618 FunFam Polyadenylate-binding protein 514 596 - -
Mupr14312g00002 618 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 518 595 IPR002004 GO:0003723
Mupr14312g00002 618 MobiDBLite consensus disorder prediction 596 618 - -
Mupr14312g00002 618 Gene3D - 3 98 IPR012677 -
Mupr14312g00002 618 Gene3D - 177 271 IPR012677 -
Mupr14312g00002 618 Gene3D - 277 373 IPR012677 -
Mupr14312g00002 618 Pfam Poly-adenylate binding protein, unique domain 526 590 IPR002004 GO:0003723
Mupr14312g00002 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Mupr14312g00002 618 SUPERFAMILY PABC (PABP) domain 471 598 IPR036053 GO:0003723
Mupr14312g00002 618 PANTHER RNA BINDING PROTEIN 283 398 - -
Mupr14312g00002 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Mupr14312g00002 618 MobiDBLite consensus disorder prediction 598 618 - -
Mupr14312g00002 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Mupr14312g00002 618 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 17 591 IPR006515 GO:0003723
Mupr14312g00002 618 CDD RRM2_I_PABPs 103 177 IPR045305 -
Mupr14312g00002 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 365 IPR000504 GO:0003723
Mupr14312g00002 618 SUPERFAMILY RNA-binding domain, RBD 188 369 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14312g00002 Mupr-Chr14312 6057 9843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14312g00002 16 592 Eukaryotic Initiation Factors Gene Family AT4G34110 55.499 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14312g00002 K13126 - gmx:100784442 687.952