Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14306g00002 ATGGAGCAAGCGGTGTCACTGATTGGTGCCCTCAACCTCGTATCCCGCAACCTTCCTCTTCCCCCCGAACTCTTTCACACCGTTTCTTCTATCTATCGCCGATCTGAACCTCTCAACTCCTCGGTCGATGCACCGGAAGAAGATTTGTTGGCCGACCTTCAAGATGCACTGTTGAAGCAGCGTCCTAACTGCGCCTCCGGTTTCAAATTGAACAAAACTATGGAAAGCCGTTATCAGAGTCAGATTCAGCACCGCTTAACCGAACTCCAAGGTTCGCCGTTTCACTCGAAAGGAAATGCCTACTTGTGTAAACTGCTTCCACATATTTCTGAACATGCTGCGTCTTTGTATGGATTAATTAAAACTGAATCTGAACAAGAGCGATTGTGTTACGACACATGGTTAAGAAGATTGCCTTCAAGCAGGGGAGAGGACCTACAGACAAAGTGCCTGCTTGAGCTTTATGGACTAAAGCTAGCTGAGTTGCAGAGGAAGGTGCGAACTGACGTCAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGATAGGCAATTGTTTGATTGGAGCATGATGCGGTTGCGTCGTCCCCTTTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGAAAGAAACGGGATGCTGAGAGACTATCAAGATTGGAAGAGCAGGCAAAAAATCATATGGAGACCAGAAAAAGAAGATTTTTTGCAGAAATACTGAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGAGGATGGTGAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTCAAAACATTCAGATGGTATTGAACCCTTGGAAGATTCAGAAACTGAATTACCTGAGTCAGATGGATTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCATAATGGCGGTGATACTAGTGATTTACTTGAAGGTCAGCGGCAATATAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAGCCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAGCTAGAAGGCCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATATTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATCTCATTGATAGCATATCTTATAGAACACAAGGGTGTGACTGGTCCTTACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCACTGAATTCTCAACATGGGCTCCTAGCATCACAGCCATTCTTTATGATGGGCGACTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTTTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCATTGGCGCTACTTGATTGTTGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAGCGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTATGGTCCCTTCTCAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGATTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAAATGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTCATAAGGCCCTTCATATTGAGAAGGAAAAAGGATGAAGTGGAAAAATTTCTTCCTAGCAAATCTCAGGTCATACTCAAATGTGATTTGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGACGTGGGCAGGGTTGGCTTAGACAATGGCTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAATGTTGTAACCATCCCTACCTCTTTGTGGGTGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAGATGACTCGGCTCATGGACATCCTTGAAATTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTAGATGGCTCAACAAAAACCGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACCTGATTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATAGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATTCAGGCAGGGCTTTTTAACACGACTTCAACAGCACAAGACAGAAGAGAAATGTTGGAGGAGATTATGCGCAGAGGTACTAGCACACTTGGTACAGATGTGCCGAGTGAGAGAGAAATTAACCGCCTTGCTGCCCGATCTGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAGCGAAGGCAAAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTAAAGGATGATAAGGTCAAAGTTTTTGATAGTGGTAATGTCACCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAACGGACAGGACATATCTAAGGTTTCAGTCAAAGGGAAAAGAAGAGACCACCTCCCTGTTGACAACCATGCACAAGCTAGTGATGACATGGGGACAGAAGAACAATTATTCGAGTTAAGGAATGAGAGTTTCCCCATGGCAAATGAGAGATCAAGTGAAGATACTTTCGATGTGACCCCTGCCTCTAAGAGACTCAAGCGTGAAGAAATAAATTTTCAGAAACATGAAAACGAGGATATCAGAGTTGGTAGTTTGAACGAGCATATATTTTCCTGGAATACTCACAAAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTCTCTGATGGTAGAGGGCAGAATGCAAATGGAAAAGCAAACTGGAACTGA 3366 0.4213 MEQAVSLIGALNLVSRNLPLPPELFHTVSSIYRRSEPLNSSVDAPEEDLLADLQDALLKQRPNCASGFKLNKTMESRYQSQIQHRLTELQGSPFHSKGNAYLCKLLPHISEHAASLYGLIKTESEQERLCYDTWLRRLPSSRGEDLQTKCLLELYGLKLAELQRKVRTDVSSEYWLNVKCAYPDRQLFDWSMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEEQAKNHMETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSETELPESDGLKNGISKESPLEEDVDLIDSDHNGGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEHKGVTGPYLIVAPKAVLPNWITEFSTWAPSITAILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLNDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSTLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLKDDKVKVFDSGNVTGKRKRKEVVYADTLSDLQWMKAVENGQDISKVSVKGKRRDHLPVDNHAQASDDMGTEEQLFELRNESFPMANERSSEDTFDVTPASKRLKREEINFQKHENEDIRVGSLNEHIFSWNTHKKKRSSYLGQGSFSDGRGQNANGKANWN 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14306g00002 1121 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Mupr14306g00002 1121 Pfam Helicase conserved C-terminal domain 728 841 IPR001650 -
Mupr14306g00002 1121 Pfam Snf2-ATP coupling, chromatin remodelling complex 935 994 IPR029295 GO:0042393
Mupr14306g00002 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 899 IPR027417 -
Mupr14306g00002 1121 FunFam Probable ATP-dependent DNA helicase CHR12 648 947 - -
Mupr14306g00002 1121 PANTHER SNF2/RAD54 HELICASE FAMILY 208 1026 - -
Mupr14306g00002 1121 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Mupr14306g00002 1121 SMART helicmild6 757 841 IPR001650 -
Mupr14306g00002 1121 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Mupr14306g00002 1121 SMART ultradead3 413 606 IPR014001 -
Mupr14306g00002 1121 Gene3D - 652 872 IPR027417 -
Mupr14306g00002 1121 Coils Coil 932 952 - -
Mupr14306g00002 1121 CDD SF2_C_SNF 719 852 - -
Mupr14306g00002 1121 SMART SnAC_2 934 994 IPR029295 GO:0042393
Mupr14306g00002 1121 Coils Coil 216 236 - -
Mupr14306g00002 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 642 IPR027417 -
Mupr14306g00002 1121 MobiDBLite consensus disorder prediction 1099 1121 - -
Mupr14306g00002 1121 MobiDBLite consensus disorder prediction 363 385 - -
Mupr14306g00002 1121 MobiDBLite consensus disorder prediction 333 388 - -
Mupr14306g00002 1121 Gene3D - 408 651 IPR038718 -
Mupr14306g00002 1121 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 898 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14306g00002 Mupr-Chr14306 18605 25273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14306g00002 714 869 RAD5 or RAD16-like Gene Family AT5G43530 36.709 1.37e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr14306g00002 SNF2_N 3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14306g00002 - - gmx:100775993 1944.09