Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr142g00006 ATGGCGGGTTCTGAGCCTTCTCCTTCTCCAAAAATCCTTCTAGCAAAGCCTGGTCTCGTCTCCGGAGGTCCCGTCGCCGGAAAATTCGGCCGTGGAGGCGCCGGAGATGACGATTCCGCTCAGCTCCGTTCTCGTCTTCCTTCCGTCGCATCCCTCAACCTTCTCTCGGATTCGTGGGACTTCCACATCGATCGCTTTCTCCCTTTTTTGACTGAGAATACGGACTTTACTGTGATTGGAGTGATTGGACCACCCGGAGTGGGAAAGTCGACTATTATGAATGAACTTTATGGTTTTGATTCAACTTCACCTGGGATGCTACCACCTTTTGCCATACAGTCCGAAGAAACTAGAGCAATGGCAAGGCACTGTTCCACGGGCATTGAACCAAGGATATCTACTGAACGTATTATTCTTCTCGATACCCAGCCTGTATTTAGTGCTTCTGTTTTAGCTGAGATGATGAGACCAGATGGCTCTTCAACGATTTCAGTGCTAAGTGGAGAAACCTTGTCAGCTGAATTGGCTCATGAGCTTATGGGTATTCAGCTTGCTGTTCTTCTAGCATCCATATGTCATATTCTGCTGGTGGTGTCAGAGGGAGTCCACGATGATAGCATGTGGCATTTGGTGTTGACGGTTGACTTGTTGAAGCATGGCATTTCAGACCCATCCTTGATGACTTTATCCCTTTCACAGAGCTCTAGTTCAGCGCTTGAGAAAGATAACAAACTTCCTGAACATGAAGAATATGTGGCTACTCCTGTGTTTGTACACACCAAGTTGCAAGATCAAGACTTTACTCCTAATAATTTTGTGCAGTTGAGGAAGGCACTCATGCAGTATTTCAGACCATCCTCTTTTGTGAGAGAACACGCTGGAAACAAACCTGAAGAGCATGTTTCATCTTCTATGGTTCGAGGCAGTCAAATGGATTCTAACATGATAAAGTTGTATGCGATCCCTCTCAAGAAAAAAGATGATAATCCAAGAGCTCAGCATGAAAGTTACTTTTCTGCACTATGGAAATTGCGTGATCAGATTTTATCCATGAAGTCACCATCTTTCACAAGATCAGTGTCAGAGCGTGAATGGTTAAAAAATTCAACCAAGATATGGGAACAAGTAAAAAACTCCCCAACGATATTGGAGTATTGTAAAACACTTCAACATTCGGGTATGGGCCAGTTTTATCCGGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCATTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCTTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAACAATCATGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACTATTTTCAGGCAGGACTTCTCTGTCACATTTCTTGCCATGGTCACAGCATTGTTGTTGATTAAGGCATTGCATTGGTTGGCTCAAAAGCGAGTTGAGTACATCGAGACCACCCCTTCAGTGCCCATGTTGTCCCATATTCGAATTTTCTATGAAGCATTTGATAGAAACGTGGCAGGCTTCAGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACTACAACGTGACATGCTTATGGAGGGGCAATGGGAAAAGAAACCGAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACGTACGATATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGTATTATCTGCCGCGAAGAGATGACTACGGCCAAGAAGCTTATATGTGGACATCTTTTTCATGTTAATTGTCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCCACCTGCAGAGCCTTGGTTGTCCCACCAGAAAATGGGACAACTACAGCTGTAGGGCAGCAAGGATCACAGTCAGATGATAATCGACAGGGAACTGGGACAGGCAGTGGAAGCACAGCTCAAACTGAGGCTACTGATAGTTTAAGTCGACATCAAGCCAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAACTCTCCTGGGTACACTATTCATCCCCCGGTTCAAAGATCAATGGCTGAATCTACTAATACGGACCGTAATGGAGAGCAAACTTCCAGTGAACAAGCACAAAGACAGTTTCTTATCGCTGGTGGACCAACAAATGTATCCTTTCCTTCAATACAACACTTCCATTTTCTACCTTCCCAAACACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCTCAGCTGGAGGCTCATAGAAAACTTCTTCAATGCCAGATTGAGATTTTGCAAAATCAGCTCGAGATTCTACAGAGGACAAAGGCAGATAAAAATGTAGATGAGGGCACATCATCATCAGATAGCAGAGGCAAGAGTATCATTTCGTCGTCATCTGAATCTGGTCATGGACTATTTTAG 2535 0.4434 MAGSEPSPSPKILLAKPGLVSGGPVAGKFGRGGAGDDDSAQLRSRLPSVASLNLLSDSWDFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNELYGFDSTSPGMLPPFAIQSEETRAMARHCSTGIEPRISTERIILLDTQPVFSASVLAEMMRPDGSSTISVLSGETLSAELAHELMGIQLAVLLASICHILLVVSEGVHDDSMWHLVLTVDLLKHGISDPSLMTLSLSQSSSSALEKDNKLPEHEEYVATPVFVHTKLQDQDFTPNNFVQLRKALMQYFRPSSFVREHAGNKPEEHVSSSMVRGSQMDSNMIKLYAIPLKKKDDNPRAQHESYFSALWKLRDQILSMKSPSFTRSVSEREWLKNSTKIWEQVKNSPTILEYCKTLQHSGMGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIFYEAFDRNVAGFSFTILLFRVHDTGNYNVTCLWRGNGKRNRNYGIPLHLIRELYETFRNFKVRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTTTAVGQQGSQSDDNRQGTGTGSGSTAQTEATDSLSRHQARLQAAAAAASIYENSPGYTIHPPVQRSMAESTNTDRNGEQTSSEQAQRQFLIAGGPTNVSFPSIQHFHFLPSQTHASPVNYGEGFENDPNIPSSQLEAHRKLLQCQIEILQNQLEILQRTKADKNVDEGTSSSDSRGKSIISSSSESGHGLF 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr142g00006 844 ProSiteProfiles Zinc finger RING-type profile. 605 643 IPR001841 -
Mupr142g00006 844 MobiDBLite consensus disorder prediction 653 692 - -
Mupr142g00006 844 MobiDBLite consensus disorder prediction 717 738 - -
Mupr142g00006 844 Pfam Ring finger domain 604 643 IPR001841 -
Mupr142g00006 844 MobiDBLite consensus disorder prediction 815 844 - -
Mupr142g00006 844 SUPERFAMILY RING/U-box 585 649 - -
Mupr142g00006 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 577 650 IPR013083 -
Mupr142g00006 844 MobiDBLite consensus disorder prediction 824 844 - -
Mupr142g00006 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 154 IPR027417 -
Mupr142g00006 844 CDD RING-H2_synoviolin 602 643 - -
Mupr142g00006 844 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 577 652 - -
Mupr142g00006 844 PANTHER UNCHARACTERIZED 4 393 IPR039177 GO:0000184
Mupr142g00006 844 MobiDBLite consensus disorder prediction 707 738 - -
Mupr142g00006 844 MobiDBLite consensus disorder prediction 653 691 - -
Mupr142g00006 844 Coils Coil 785 819 - -
Mupr142g00006 844 SMART ring_2 605 642 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr142g00006 Mupr-Chr142 45940 65526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr142g00006 392 832 C3H Transcription Factor Family AT3G16090 50.298 6.52e-137 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr142g00006 K18735 - gmx:100793317 701.434