Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr142g00004 ATGTTAAAACCTAAGCATCTCCCACACACGCACCCACGCACTCAAACACTTGTCCGGTGGTGGTCCCTCTCTCCTTCGTCTTCAACATTAGGTCTGAGGTCGACACTGCTAAACGTAAAGTACCTCACCAACATGGGAACACAACCCCGGCAAACATTTCGGGAGGAAGAGGAGGAGGAGCTGCCAGGCTGTGCAACTACAATCTCTGGTCAATCAATGTCAACAAGCAGAAGTGTTGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCAACGCCAGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGACGAGGTCTCCGCCAATTTAGTATGAAAGTTTGTGAGAAGGTCGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTCGTGGCCGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTAAGCGATATTGAAGAGCTAAAGACAGAGCGCCTTGGGCTTAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGTAACGAGCAATTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCTTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAAGCAATGAAATTTTGTGAGAGATCTCAGAATGATAATGCAGCAGACAATCCTACAGATGGCGGTGAAGGTTCTAGCATGTCAGGCTTGTACCATGCACAGGTTCCTTCTTCAGTTTCAAACACTCCAATTAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTAAAGGCAAGAATATCTTCTTTCCGAAGTAATTTTGCATGA 1173 0.4442 MLKPKHLPHTHPRTQTLVRWWSLSPSSSTLGLRSTLLNVKYLTNMGTQPRQTFREEEEEELPGCATTISGQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNAADNPTDGGEGSSMSGLYHAQVPSSVSNTPIRPPSSPPLPGILKARISSFRSNFA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr142g00004 390 MobiDBLite consensus disorder prediction 48 98 - -
Mupr142g00004 390 Gene3D Transcription factor DP 223 345 IPR038168 -
Mupr142g00004 390 Coils Coil 233 267 - -
Mupr142g00004 390 FunFam Transcription factor-like protein DPB 129 222 - -
Mupr142g00004 390 SMART E2F_TDP_2 134 217 IPR003316 GO:0005667|GO:0006355
Mupr142g00004 390 FunFam Transcription factor-like protein DPB 223 347 - -
Mupr142g00004 390 Pfam E2F/DP family winged-helix DNA-binding domain 137 217 IPR003316 GO:0005667|GO:0006355
Mupr142g00004 390 SMART DP_2 224 384 IPR014889 -
Mupr142g00004 390 MobiDBLite consensus disorder prediction 110 137 - -
Mupr142g00004 390 MobiDBLite consensus disorder prediction 65 98 - -
Mupr142g00004 390 MobiDBLite consensus disorder prediction 333 352 - -
Mupr142g00004 390 SUPERFAMILY "Winged helix" DNA-binding domain 137 218 IPR036390 -
Mupr142g00004 390 Pfam Transcription factor DP 225 339 IPR014889 -
Mupr142g00004 390 CDD DP_DD 222 325 IPR014889 -
Mupr142g00004 390 MobiDBLite consensus disorder prediction 358 377 - -
Mupr142g00004 390 SUPERFAMILY E2F-DP heterodimerization region 224 338 IPR037241 -
Mupr142g00004 390 Gene3D - 129 222 IPR036388 -
Mupr142g00004 390 PANTHER TRANSCRIPTION FACTOR DP 66 360 IPR015648 GO:0005667|GO:0051726
Mupr142g00004 390 PIRSF Txn_factor_DP 42 384 IPR015648 GO:0005667|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr142g00004 Mupr-Chr142 25347 34487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr142g00004 135 333 E2F-DP Transcription Factor Family AT5G02470 55.500 1.99e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mupr142g00004 DP 6.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr142g00004 K04683 - gmx:100781272 581.637