Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr142g00002 ATGGAACCCCACAAGGCCTTTAATTTGCAGTTGAGAACTGTGCTCCCCATGGCAGCTATGCGAGAATTTTCCAGAGTCTTACTATCTCACTTAAAACCCCATGCTTCTCTATCTCAACATCTCTTCCTCCGAACAATGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAACTTTTTCTGAATACGGCAGAGTCCTGAAGGCTGATATAATACTTAATAAAGCCAAGAATAGATCCAAGGGTTTTGGATACGTGACTTTCGCTAAAGAGGAAGAAGCACACAAGGCACAGATTGGCATGAATAGAAAGGCCAGAATCTACTAA 351 0.4103 MEPHKAFNLQLRTVLPMAAMREFSRVLLSHLKPHASLSQHLFLRTMTSKIFVKGLAFSTTEEELAKTFSEYGRVLKADIILNKAKNRSKGFGYVTFAKEEEAHKAQIGMNRKARIY 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr142g00002 116 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 47 111 - -
Mupr142g00002 116 Gene3D - 31 114 IPR012677 -
Mupr142g00002 116 SMART rrm1_1 49 116 IPR000504 GO:0003723
Mupr142g00002 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 112 IPR000504 GO:0003723
Mupr142g00002 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 116 IPR000504 GO:0003723
Mupr142g00002 116 SUPERFAMILY RNA-binding domain, RBD 48 112 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr142g00002 Mupr-Chr142 13602 15177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr142g00002 44 110 Eukaryotic Initiation Factors Gene Family AT4G34110 35.821 5.74e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr142g00002 - K13195 gmx:100527061 155.606