Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14266g00001 ATGCAACCATCGAACGGCTCTGATTCGCAAGCGACGGAGCAGAACCGGCAGCAGCAGACGCCGCCTCCGCAGGCAGTGGCAGTGCCGCCTCAGTGGATGCCGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCATCACATGATGCCGCCTCAGCATTACGCGCCGCCGCCGCCGCAGACCTACATGGCCTACCACCAGTACCAGCAGCAGGTCCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAGACCGTATGGGTCGGCGATTTGCATCATTGGATGGACGAGAATTATCTTCACCGCTGTTTCGCTTCTACCGGCGAGATTTCCTCTATTAAGGTTATTCGCAATAAGCAGACTGGTTTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCGGAGAAAGTTTTGCAGAATTATGCTGGGATACTGATGCCCAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACCGGAGACAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAGTGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACATCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGACTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAATGGTTCGCCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGATTTCAGCAGTCCGTGGAGTGGGGCGTATTATGGGGGTCCTATATATGATGGTTATGGATATGCTTTGCCACCTCCTCATGACCCGAGCATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAACAGCAAAGAAAGCTCCTCAACCGTATAATTTAA 1269 0.4831 MQPSNGSDSQATEQNRQQQTPPPQAVAVPPQWMPMQYPAAAMVMQHHMMPPQHYAPPPPQTYMAYHQYQQQVPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFSSPWSGAYYGGPIYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQRKLLNRII 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14266g00001 422 Gene3D - 87 166 IPR012677 -
Mupr14266g00001 422 Gene3D - 271 387 IPR012677 -
Mupr14266g00001 422 CDD RRM3_NGR1_NAM8_like 285 356 - -
Mupr14266g00001 422 FunFam Polyadenylate-binding protein RBP47C isoform A 180 256 - -
Mupr14266g00001 422 MobiDBLite consensus disorder prediction 1 22 - -
Mupr14266g00001 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 358 IPR000504 GO:0003723
Mupr14266g00001 422 SUPERFAMILY RNA-binding domain, RBD 165 275 IPR035979 GO:0003676
Mupr14266g00001 422 MobiDBLite consensus disorder prediction 1 29 - -
Mupr14266g00001 422 MobiDBLite consensus disorder prediction 257 288 - -
Mupr14266g00001 422 CDD RRM2_SECp43_like 180 259 - -
Mupr14266g00001 422 FunFam Polyadenylate-binding protein RBP47C isoform A 87 167 - -
Mupr14266g00001 422 CDD RRM1_SECp43_like 89 169 - -
Mupr14266g00001 422 SUPERFAMILY RNA-binding domain, RBD 51 171 IPR035979 GO:0003676
Mupr14266g00001 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Mupr14266g00001 422 SMART rrm1_1 89 164 IPR000504 GO:0003723
Mupr14266g00001 422 SMART rrm1_1 287 354 IPR000504 GO:0003723
Mupr14266g00001 422 SMART rrm1_1 182 256 IPR000504 GO:0003723
Mupr14266g00001 422 MobiDBLite consensus disorder prediction 261 288 - -
Mupr14266g00001 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Mupr14266g00001 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Mupr14266g00001 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 349 IPR000504 GO:0003723
Mupr14266g00001 422 FunFam Polyadenylate-binding protein RBP47 271 388 - -
Mupr14266g00001 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Mupr14266g00001 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 362 - -
Mupr14266g00001 422 Gene3D - 167 270 IPR012677 -
Mupr14266g00001 422 SUPERFAMILY RNA-binding domain, RBD 276 386 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14266g00001 Mupr-Chr14266 2331 7783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14266g00001 90 395 Eukaryotic Initiation Factors Gene Family AT2G23350 28.869 2.60e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14266g00001 - - gmx:100777830 708.753