Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14200g00001 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATCACAGAGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCACCGGTTATCCAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGATTGGAAGAAAGTGAGACTACTTGGCCGGGTCGTAAGCATGTGGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAGGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGCATAGGGATGGAACCATCCAATGTTTCATCAAGAGAGATAAATCGAAGCTGACGTACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAAAGGACTAGAAGAACAACTTGTACAGAGTATATTATATCTATGGATGCAGATAACATATCGAGATCTAACAGTACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGACACACAACCTCCTTACAACAATGCTATGTTATCTCCACCTGGCCGCAGCCGGAGGTTTTCTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGGCCGCGAAGGATGAACTGCACAATGTACTCAATTCCTGTATCAGCCCTTGAGCCTGGTGGCGCTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGGGTCCTCGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATCGACAATTCAACCGAGTTTAGCAGTGCTAGGTTCTCAGACATAATGGGAACTGGCAATGAAGAAGAGGAGGGAAAGGTGAGACCATTAGTTCTCAAGAACAAGTCTCCAAGGTGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGAGGAAGGGTCACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCGGCAACACCGCCAGCAGCTGGTGCTTCTACAGGAACAGGACCTACACCATCTCAGCCAACACAGTCCTCTTCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAA 1293 0.4741 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSRSSVHELQEQPPVIQNSRWASLPPELLRDVIKRLEESETTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSNSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPVSALEPGGAVPGQPELLPRVLEDSFRSISFSKSIDNSTEFSSARFSDIMGTGNEEEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPAAGASTGTGPTPSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14200g00001 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Mupr14200g00001 431 MobiDBLite consensus disorder prediction 366 386 - -
Mupr14200g00001 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Mupr14200g00001 431 FunFam Tubby-like F-box protein 110 431 - -
Mupr14200g00001 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Mupr14200g00001 431 Gene3D - 48 101 - -
Mupr14200g00001 431 PANTHER TUBBY-RELATED 33 429 - -
Mupr14200g00001 431 Pfam Tub family 114 426 IPR000007 -
Mupr14200g00001 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Mupr14200g00001 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mupr14200g00001 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Mupr14200g00001 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mupr14200g00001 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Mupr14200g00001 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Mupr14200g00001 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Mupr14200g00001 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Mupr14200g00001 431 FunFam Tubby-like F-box protein 48 101 - -
Mupr14200g00001 431 CDD F-box_AtTLP-like 53 97 - -
Mupr14200g00001 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Mupr14200g00001 431 MobiDBLite consensus disorder prediction 370 386 - -
Mupr14200g00001 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14200g00001 Mupr-Chr14200 9410 12168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14200g00001 1 431 TUB Transcription Factor Family AT1G76900 69.499 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr14200g00001 Tub 6.5e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14200g00001 K19600 - gmx:100817532 782.326